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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgaggtttgggttcggtctgggctggcccgcatgcgcattgctcacgttcgctggggtttgcgtgcagGTCTACGAGAAGAAGGTGTCATGCCTGTCGAACTTCAACTTGGAAGGCCGGAACAACGGTGGCACGGCCAACTCGCCCCGGCCCAACGCGCTGGCGAACA

Basic information

species Chlamydomonas reinhardtii
transcript EDO98296
intron # 3
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|161819998|gb|FC109684.1|FC109684
EST:     ACACGCGGATGCTGTTGTCCACCAACGACAAGACCGTGAAGCTATGGAAG                         GTCTACGAGAAGAAGGTGTCATGCCTGTCGAACTTCAACTTGGAAGGCCGG
genomic: ACACGCGGATGCTGTTGTCCACCAACGACAAGACCGTGAAGCTATGGAAGgtgaggtttg ... ttgcgtgcagGTCTACGAGAAGAAGGTGTCATGCCTGTCGAACTTCAACTTGGAAGGCCGG
EST: gi|161802583|gb|FC092394.1|FC092394
EST:     ACACGCGGATGCTGTTGTCCACCAACGACAAGACCGTGAAGCTATGGAAG                         GTCTACGAGAAGAAGGTGTCATGCCTGTCGAACTTCAACTTGGAAGGCCGG
genomic: ACACGCGGATGCTGTTGTCCACCAACGACAAGACCGTGAAGCTATGGAAGgtgaggtttg ... ttgcgtgcagGTCTACGAGAAGAAGGTGTCATGCCTGTCGAACTTCAACTTGGAAGGCCGG
EST: gi|8514502|gb|BE122397.1|BE122397
EST:     ACACGCGGATGCTGTTGTCCACCAACGACAAGACCGTTAAGCTATGGAAG                         GTCTACGAGAAGAAGGTGTCATGCCTGTCGAACTTCAACT
genomic: ACACGCGGATGCTGTTGTCCACCAACGACAAGACCGTGAAGCTATGGAAGgtgaggtttg ... ttgcgtgcagGTCTACGAGAAGAAGGTGTCATGCCTGTCGAACTTCAACT
EST: gi|161795145|gb|FC078796.1|FC078796
EST:     ACACGCGGATGCTGTTGTCCACCAACGACAAGACCGTGAAGCTATGGAAG                         GTCTACGAGAAGAAGGTGTCATGCCTGTCGAACTTCAACTTGGAAGGCCGG
genomic: ACACGCGGATGCTGTTGTCCACCAACGACAAGACCGTGAAGCTATGGAAGgtgaggtttg ... ttgcgtgcagGTCTACGAGAAGAAGGTGTCATGCCTGTCGAACTTCAACTTGGAAGGCCGG
EST: gi|16437384|gb|BM002604.1|BM002604
EST:     ACACGCGGATGCTGTTGTCCACCAACGACAAGACCGTGAAGCTATGGAAG                         GTCTACGAGAAGAAGGTGTCATGCCTGTCGAACTTCAACTTGGAAGGCCGG
genomic: ACACGCGGATGCTGTTGTCCACCAACGACAAGACCGTGAAGCTATGGAAGgtgaggtttg ... ttgcgtgcagGTCTACGAGAAGAAGGTGTCATGCCTGTCGAACTTCAACTTGGAAGGCCGG
EST: gi|23363557|gb|BU651377.1|BU651377
EST:     CACGCGGATGCTGTTGTCCACCAACGANCA-GACCGTGAAGCTATGGAAG                         GTCTACGAGAAGAAGGTGTCATGCCTGTCGAACTTCA-CTTGGA-GGCCGG
genomic: CACGCGGATGCTGTTGTCCACCAACGA-CAAGACCGTGAAGCTATGGAAGgtgaggtttg ... ttgcgtgcagGTCTACGAGAAGAAGGTGTCATGCCTGTCGAACTTCAACTTGGAAGGCCGG
EST: gi|15701364|gb|BI725669.1|BI725669
EST:     ACACGCGGATGCTGTTGTCCACCAACGACAAGACCGTGAAGCTATGGAAG                         GTCTACGAGAAGAAGGTGTCATGCCTGTCGAACTTCAACTTGGAAGGCCGG
genomic: ACACGCGGATGCTGTTGTCCACCAACGACAAGACCGTGAAGCTATGGAAGgtgaggtttg ... ttgcgtgcagGTCTACGAGAAGAAGGTGTCATGCCTGTCGAACTTCAACTTGGAAGGCCGG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cggtctgggctggcccgcatgcgcattgctcacgttcgctggggtttgcgtgcagGTCTACGAGAAGAAGGTGTCATGCCTGTCGAACTTCAACTTGGAAGGCCGGAACAACGGTGGCACGGCCAACTCGCCCCGGCCCAACGCGCTGGCGAACA
                          tgctcac  putative branch site (score: 2)