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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgcggggagttgcgcatggcgtcctcaatgcgcaccggtcagagcagggatggggttatcagtactcacaacctcgtttcttgtttgcagCTGATGGCAGCTGGCGGTAACCTGCGCGGGCGCCAGTTCTTCAAGCAGCATGGGTGGGACGACGTGGGCAGCGACAAGATCGAGTCCAAG

Basic information

species Chlamydomonas reinhardtii
transcript EDO98081
intron # 3
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|15704435|gb|BI728740.1|BI728740
EST:     GTCCACCACTCTGGACTCCTGGACACAGGAGCAGCTCAAG                         CTGATGGCAGCTGGCGGTAACCTGCGCGGGCGCCAGTTCTTCAAGCAGCAT
genomic: GTCCACCACTCTGGACTCCTGGACACAGGAGCAGCTCAAGgtgcggggag ... ttgtttgcagCTGATGGCAGCTGGCGGTAACCTGCGCGGGCGCCAGTTCTTCAAGCAGCAT
EST: gi|23366005|gb|BU653825.1|BU653825
EST:     GTCCACCACTCTGGACTCCTGGACACAGGAGCAGCTCAAG                         CTGATGGCAGCTGGCGGTAACCTGCGCGGGCGCCAGTTCTTCAAGCAGCAT
genomic: GTCCACCACTCTGGACTCCTGGACACAGGAGCAGCTCAAGgtgcggggag ... ttgtttgcagCTGATGGCAGCTGGCGGTAACCTGCGCGGGCGCCAGTTCTTCAAGCAGCAT
EST: gi|15369548|gb|BI528974.1|BI528974
EST:     GTCCACCACTCTGGACTCCTGGACACAGGAGCAGCTCAAG                         CTGATGGCAGCTGGCGGTAACCTGCGCGGGCGCCAGTTCTTCAAGCAGCAT
genomic: GTCCACCACTCTGGACTCCTGGACACAGGAGCAGCTCAAGgtgcggggag ... ttgtttgcagCTGATGGCAGCTGGCGGTAACCTGCGCGGGCGCCAGTTCTTCAAGCAGCAT
EST: gi|16072701|gb|BI874697.1|BI874697
EST:     GTCCACCACTCTGGACTCCTGGACACAGGAGCAGCTCAAG                         CTGATGGCAGCTGGCGGTAACCTGCGCGGGCGCCAGTTCTTCAAGCAGCAT
genomic: GTCCACCACTCTGGACTCCTGGACACAGGAGCAGCTCAAGgtgcggggag ... ttgtttgcagCTGATGGCAGCTGGCGGTAACCTGCGCGGGCGCCAGTTCTTCAAGCAGCAT
EST: gi|14229761|gb|BG848577.1|BG848577
EST:     GTCCACCACTCTGGACTCCTGGACACAGGAGCAGCTCAAG                         CTGATGGCAGCTGGCGGTAACCTGCGCGGGCGCCAGTTCTTCAAGCAGCAT
genomic: GTCCACCACTCTGGACTCCTGGACACAGGAGCAGCTCAAGgtgcggggag ... ttgtttgcagCTGATGGCAGCTGGCGGTAACCTGCGCGGGCGCCAGTTCTTCAAGCAGCAT
EST: gi|8287287|gb|BE024846.1|BE024846
EST:     GGCCACCACTCTGGACTCCTGGACACAGGAGCAGCTCAAG                         CTGATGGCAGCTGGCGGTAACCTGCGCGGGCGC
genomic: GTCCACCACTCTGGACTCCTGGACACAGGAGCAGCTCAAGgtgcggggag ... ttgtttgcagCTGATGGCAGCTGGCGGTAACCTGCGCGGGCGC
EST: gi|14229760|gb|BG848576.1|BG848576
EST:     GTCCACCACTCTGGACTCCTGGACACAGGAGCAGCTCAAG                         CTGATGGCAGCTGGCGGTAACCTGCGCGGGCGCCAGTTCTTCAAGCAGCAT
genomic: GTCCACCACTCTGGACTCCTGGACACAGGAGCAGCTCAAGgtgcggggag ... ttgtttgcagCTGATGGCAGCTGGCGGTAACCTGCGCGGGCGCCAGTTCTTCAAGCAGCAT
EST: gi|16436996|gb|BM002216.1|BM002216
EST:     GTCCACCACTCTGGACTCCTGGACACAGGAGCAGCTCAAG                         CTGATGGCAGCTGGCGGTAACCTGCGCGGGCGCCAGTTCTTCAAGCAGCAT
genomic: GTCCACCACTCTGGACTCCTGGACACAGGAGCAGCTCAAGgtgcggggag ... ttgtttgcagCTGATGGCAGCTGGCGGTAACCTGCGCGGGCGCCAGTTCTTCAAGCAGCAT
EST: gi|23363043|gb|BU650863.1|BU650863
EST:     GTCCACCACTCTGGACTCCTGGACACAGGAGCAGCTCAAG                         CTGATGGCAGCTGGCGGTAACCTGCGCGGGCGCCAGTTCTTCAAGCAGCAT
genomic: GTCCACCACTCTGGACTCCTGGACACAGGAGCAGCTCAAGgtgcggggag ... ttgtttgcagCTGATGGCAGCTGGCGGTAACCTGCGCGGGCGCCAGTTCTTCAAGCAGCAT
EST: gi|14237609|gb|BG856425.1|BG856425
EST:     GTCCACCACTCTGGACTCCTGGACACAGGAGCAGCTCAAG                         CTGATGGCAGCTGGCGGTAACCTGCGCGGGCGCCAGTTCTTCAAGCAGCAT
genomic: GTCCACCACTCTGGACTCCTGGACACAGGAGCAGCTCAAGgtgcggggag ... ttgtttgcagCTGATGGCAGCTGGCGGTAACCTGCGCGGGCGCCAGTTCTTCAAGCAGCAT
EST: gi|22068393|gb|BQ818332.1|BQ818332
EST:     GTCCACCACTCTGGACTCCTGGACACAGGAGCAGCTCAAG                         CTGATGGCAGCTGGCGGTAACCTGCGCGGGCGCCAGTTCTTCAAGCAGCAT
genomic: GTCCACCACTCTGGACTCCTGGACACAGGAGCAGCTCAAGgtgcggggag ... ttgtttgcagCTGATGGCAGCTGGCGGTAACCTGCGCGGGCGCCAGTTCTTCAAGCAGCAT
EST: gi|23362874|gb|BU650694.1|BU650694
EST:     GTCCACCACTCTGGACTCCTGGACACAGGAGCAGCTCAAG                         CTGATGGCAGCTGGCGGTAACCTGCGCGGGCGCCAGTTCTTCAAGCAGCAT
genomic: GTCCACCACTCTGGACTCCTGGACACAGGAGCAGCTCAAGgtgcggggag ... ttgtttgcagCTGATGGCAGCTGGCGGTAACCTGCGCGGGCGCCAGTTCTTCAAGCAGCAT
EST: gi|22073645|gb|BQ822983.1|BQ822983
EST:     GTCCACCACTCTGGACTCCTGGACACAGGAGCAGCTCAAG                         CTGATGGCAGCTGGCGGTAACCTGCGCGGGCGCCAGTTCTTCAAGCAGCAT
genomic: GTCCACCACTCTGGACTCCTGGACACAGGAGCAGCTCAAGgtgcggggag ... ttgtttgcagCTGATGGCAGCTGGCGGTAACCTGCGCGGGCGCCAGTTCTTCAAGCAGCAT
EST: gi|22073669|gb|BQ823007.1|BQ823007
EST:     GTCCACCACTCTGGACTCCTGGACACAGGAGCAGCTCAAG                         CTGATGGCAGCTGGCGGTAACCTGCGCGGGCGCCAGTTCTTCAAGCAGCAT
genomic: GTCCACCACTCTGGACTCCTGGACACAGGAGCAGCTCAAGgtgcggggag ... ttgtttgcagCTGATGGCAGCTGGCGGTAACCTGCGCGGGCGCCAGTTCTTCAAGCAGCAT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cggtcagagcagggatggggttatcagtactcacaacctcgtttcttgtttgcagCTGATGGCAGCTGGCGGTAACCTGCGCGGGCGCCAGTTCTTCAAGCAGCATGGGTGGGACGACGTGGGCAGCGACAAGATCGAGTCCAAG
                           tactcac  putative branch site (score: 1)
                                    cctcgtttcttgttt  putative PPT