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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagtttaacatgacaatgcagacaatactgttcatgaactagtgcacacagatgccagacatccgtcggtgacagctccttgcccatgtgaaccgcagAAAGCTGCTGAAGAGAGCCGGGACTCCATCGCCGCGGCACTGCAAGATACTGACATGGTATTCGTGACG

Basic information

species Chlamydomonas reinhardtii
transcript EDO98063
intron # 3
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|161792230|gb|FC079209.1|FC079209
EST:     GCAAGCTTACCCGCGGTCTCGGCGCCGGAGGCAACCCTGAGATCGGCGCT                         AAAGCTGCTGAAGAGAGCCGGGACTCCATCGCCGCGGCACTGCAAGATACT
genomic: GCAAGCTTACCCGCGGTCTCGGCGCCGGAGGCAACCCTGAGATCGGCGCTgtgagtttaa ... tgaaccgcagAAAGCTGCTGAAGAGAGCCGGGACTCCATCGCCGCGGCACTGCAAGATACT
EST: gi|14236905|gb|BG855721.1|BG855721
EST:     GCAAGCTTACCCGCGGTCTCGGCGCCGGAGGCAACCCTGAGATCGGCGCT                         AAAGCTGCTGAAGAGAGCCGGGACTCCATCGCCGCGGCACTGCAAGATACT
genomic: GCAAGCTTACCCGCGGTCTCGGCGCCGGAGGCAACCCTGAGATCGGCGCTgtgagtttaa ... tgaaccgcagAAAGCTGCTGAAGAGAGCCGGGACTCCATCGCCGCGGCACTGCAAGATACT
EST: gi|161811521|gb|FC098025.1|FC098025
EST:     GCAAGCTTACCCGCGGTCTCGGCGCCGGAGGCAACCCTGAGATCGGCGCT                         AAAGCTGCTGAAGAGAGCCGGGACTCCATCGCCGCGGCACTGCAAGATACT
genomic: GCAAGCTTACCCGCGGTCTCGGCGCCGGAGGCAACCCTGAGATCGGCGCTgtgagtttaa ... tgaaccgcagAAAGCTGCTGAAGAGAGCCGGGACTCCATCGCCGCGGCACTGCAAGATACT
EST: gi|8287575|gb|BE025134.1|BE025134
EST:     GCAAGCTTACCCGCGGTCTCGGCGCCGGAGGCAACCCTGAGATCGGCGCT                         AAAGCTGCTGAAGAGAGCCGGGACTCCATCGCCGCGGCACTGCAAGATACT
genomic: GCAAGCTTACCCGCGGTCTCGGCGCCGGAGGCAACCCTGAGATCGGCGCTgtgagtttaa ... tgaaccgcagAAAGCTGCTGAAGAGAGCCGGGACTCCATCGCCGCGGCACTGCAAGATACT

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
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---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtgagtttaacatgacaatgcagacaatactgttcatgaactagtgcacacagatgccagacatccgtcggtgacagctccttgcccatgtgaaccgcagAAAGCTGCTGAAGAGAGCCGGGACTCCATCGCCGCGGCACTGCAAGATACTGACATGGTATTCGTGACG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GCAAGA