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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtagggacgaggcgaagagacacgcgtgtggtggtagggaggcgtcggtgggaggctaacccaggtaggcaccacagtcgattgcccccgttgtgaggggaggtttggctattggccaagacggtcgaaatgcgtggggtgcactactgagctgactcgagttgttgcgtcactgcacagGCCATGGGCATCCAGCGCTACGTGTTCTTCTCCATCTTCGACTGCGACAAACATCCCCAG

Basic information

species Chlamydomonas reinhardtii
transcript EDO98046
intron # 3
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|15367687|gb|BI527113.1|BI527113
EST:     CGCGCAAAGTTGATTGGGAGGGCAAGGTGGCGCTCATCCAGTCCGCGCAG                         GCCATGGGCATCCAGCGCTACGTGTTCTTCTCCATCTTCGACTGCGACAAA
genomic: CGCGCAAAGTTGATTGGGAGGGCAAGGTGGCGCTCATCCAGTCCGCGCAGgtagggacga ... cactgcacagGCCATGGGCATCCAGCGCTACGTGTTCTTCTCCATCTTCGACTGCGACAAA
EST: gi|14237765|gb|BG856581.1|BG856581
EST:     CGCGCAAAGTTGATTGGGAGGGCAAGGTGGCGCTCATCCAGTCCGCGCAG                         GCCATGGGCATCCAGCGCTACGTGTTCTTCTCCATCTTCGACTGCGACAAA
genomic: CGCGCAAAGTTGATTGGGAGGGCAAGGTGGCGCTCATCCAGTCCGCGCAGgtagggacga ... cactgcacagGCCATGGGCATCCAGCGCTACGTGTTCTTCTCCATCTTCGACTGCGACAAA
EST: gi|14240632|gb|BG859448.1|BG859448
EST:     CGCGCAAAGTTGATTGGGAGGGCAAGGTGGCGCTCATCCAGTCCGCGCAG                         GCCATGGGCATCCAGCGCTACGTGTTCTTCTCCATCTTCGACTGCGACAAA
genomic: CGCGCAAAGTTGATTGGGAGGGCAAGGTGGCGCTCATCCAGTCCGCGCAGgtagggacga ... cactgcacagGCCATGGGCATCCAGCGCTACGTGTTCTTCTCCATCTTCGACTGCGACAAA
EST: gi|22074089|gb|BQ823292.1|BQ823292
EST:     CGCGCAAAGTTGATTGGGAGGGCAAGGTGGCGCTCATCCAGTCCGCGCAG                         GCCATGGGCATCCAGCGCTACGTGTTCTTCTCCATCTTCGACTGCGACAAA
genomic: CGCGCAAAGTTGATTGGGAGGGCAAGGTGGCGCTCATCCAGTCCGCGCAGgtagggacga ... cactgcacagGCCATGGGCATCCAGCGCTACGTGTTCTTCTCCATCTTCGACTGCGACAAA
EST: gi|22059343|gb|BQ813385.1|BQ813385
EST:     CGCGCAAAGTTGATTGGGAGGGCAAGGTGGCGCTCATCCAGTCCGCGCAG                         GCCATGGGCATCCAGCGCTACGTGTTCTTCTCCATCTTCGACTGCGACAAA
genomic: CGCGCAAAGTTGATTGGGAGGGCAAGGTGGCGCTCATCCAGTCCGCGCAGgtagggacga ... cactgcacagGCCATGGGCATCCAGCGCTACGTGTTCTTCTCCATCTTCGACTGCGACAAA
EST: gi|15372908|gb|BI532334.1|BI532334
EST:     CGCGCAAAGTTGATTGGGAGGGCAAGGTGGCGCTCATCCAGTCCGCGCAG                         GCCATGGGCATCCAGCGCTACGTGTTCTTCTCCATCTTCGACTGCGACAAA
genomic: CGCGCAAAGTTGATTGGGAGGGCAAGGTGGCGCTCATCCAGTCCGCGCAGgtagggacga ... cactgcacagGCCATGGGCATCCAGCGCTACGTGTTCTTCTCCATCTTCGACTGCGACAAA
EST: gi|7593489|gb|AW707740.1|AW707740
EST:     CGCGCAAAGTTGATTGGGAGGGCAAGGTGGCGCTCATCCAGTCCGCGCAG                         GCCATGGGCATCCAGCGCTACGTGTTCTTCTCCATCTTCGACTGCGACAAA
genomic: CGCGCAAAGTTGATTGGGAGGGCAAGGTGGCGCTCATCCAGTCCGCGCAGgtagggacga ... cactgcacagGCCATGGGCATCCAGCGCTACGTGTTCTTCTCCATCTTCGACTGCGACAAA
EST: gi|22065979|gb|BQ816678.1|BQ816678
EST:     CGCGCAAAGTTGATTGGGAGGGCAAGGTGGCGCTCATCCAGTCCGCGCAG                         GCCATGGGCATCCAGCGCTACGTGTTCTTCTCCATCTTCGACTGCGACAAA
genomic: CGCGCAAAGTTGATTGGGAGGGCAAGGTGGCGCTCATCCAGTCCGCGCAGgtagggacga ... cactgcacagGCCATGGGCATCCAGCGCTACGTGTTCTTCTCCATCTTCGACTGCGACAAA
EST: gi|22065986|gb|BQ816683.1|BQ816683
EST:     CGCGCAAAGTTGATTGGGAGGGCAAGGTGGCGCTCATCCAGTCCGCGCAG                         GCCATGGGCATTCAGCGC
genomic: CGCGCAAAGTTGATTGGGAGGGCAAGGTGGCGCTCATCCAGTCCGCGCAGgtagggacga ... cactgcacagGCCATGGGCATCCAGCGC
EST: gi|14238251|gb|BG857067.1|BG857067
EST:     CGCGCAAAGTTGATTGGGAGGGCAAGGTGGCGCTCATCCAGTCCGCGCAG                         GCCATGGGCATCCAGCGCTACGTGTTCTTCTCCATCTTCGACTGCGACAAA
genomic: CGCGCAAAGTTGATTGGGAGGGCAAGGTGGCGCTCATCCAGTCCGCGCAGgtagggacga ... cactgcacagGCCATGGGCATCCAGCGCTACGTGTTCTTCTCCATCTTCGACTGCGACAAA
EST: gi|8513586|gb|BE121481.1|BE121481
EST:     CGCGCAAAGTTGATTGGGAGGGCAAGGTGGCGCTCATCCAGTCCGCGCAG                         GCCATGGGCATCCAGCGCTACGTGTTCTTCTCCATCTTCGACTGCGACAAA
genomic: CGCGCAAAGTTGATTGGGAGGGCAAGGTGGCGCTCATCCAGTCCGCGCAGgtagggacga ... cactgcacagGCCATGGGCATCCAGCGCTACGTGTTCTTCTCCATCTTCGACTGCGACAAA
EST: gi|161817687|gb|FC099976.1|FC099976
EST:     CGCGCAAAGTTGATTGGGAGGGCAAGGTGGCGCTCATCCAGTCCGCGCAG                         GCCATGGGCATCCAGCGCTACGTGTTCTTCTCCATCTTCGACTGCGACAAA
genomic: CGCGCAAAGTTGATTGGGAGGGCAAGGTGGCGCTCATCCAGTCCGCGCAGgtagggacga ... cactgcacagGCCATGGGCATCCAGCGCTACGTGTTCTTCTCCATCTTCGACTGCGACAAA
EST: gi|7615363|gb|AW720809.1|AW720809
EST:     CGCGCAAAGTTGATTGGGAGGGCAAGGTGGCGCTCATCCAGTCCGCGCAG                         GCCATGGGCATCCAGCGCTACGTGTTCTTCTCCATCTTCGACTGCGACAAA
genomic: CGCGCAAAGTTGATTGGGAGGGCAAGGTGGCGCTCATCCAGTCCGCGCAGgtagggacga ... cactgcacagGCCATGGGCATCCAGCGCTACGTGTTCTTCTCCATCTTCGACTGCGACAAA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cgaaatgcgtggggtgcactactgagctgactcgagttgttgcgtcactgcacagGCCATGGGCATCCAGCGCTACGTGTTCTTCTCCATCTTCGACTGCGACAAACATCCCCAG
                        agctgac  putative branch site (score: 3)