1 5' 3' | 2 5' 3' | 3 5' 3' |
...cgcaatctcttcttgtaccggatgccatccactgtacttgctcttctcgcgtccccgcgcgcccctaattgccaccaaacgtttccgaccctctccgcagCCACCTGGCCTACCGCTGTTGGCATGCGCAGCCCTCCAAGCGCCCCACTGCCGTAGACCTGGTGCATGAGCTGCAGGCACTGCTGGAGGCGGCGCGTGCG
species | Chlamydomonas reinhardtii |
transcript | EDO98041 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
ctcgcgtccccgcgcgcccctaattgccaccaaacgtttccgaccctctccgcagCCACCTGGCCTACCGCTGTTGGCATGCGCAGCCCTCCAAGCGCCCCACTGCCGTAGACCTGGTGCATGAGCTGCAGGCACTGCTGGAGGCGGCGCGTGCG
ccctaat putative branch site (score: 3)
tttccgaccctctcc putative PPT
taatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| cgcaatctcttcttgtaccggatgccatccactgtacttgctcttctcgcgtccccgcgcgcccctaattgccaccaaacgtttccgaccctctccgcagCCACCTGGCCTACCGCTGTTGGCATGCGCAGCCCTCCAAGCGCCCCACTGCCGTAGACCTGGTGCATGAGCTGCAGGCACTGCTGGAGGCGGCGCGTGCG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG
- caatctc
- - - - -ttcttgt
- - - - - - - - - - - - - atccact
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -accaaac