1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...acctatgattttgccaattgcgcccaacgtcgccttactgcacttcactaccgccaccgccgcgaaccgccgccaccaccgccgcatttctctcacacagTACCTCAAGTCCCGGATGGAGCAGCTGGAGGTGGCGCTGCAGGAGGAGCGCGAGAGCCGCAAGAAG
species | Chlamydomonas reinhardtii |
transcript | EDO97746 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: TTGGGCCCGCCCGGTCCGCCGCCCCCACCGGTTTCACCAGCAAGACCTCG TACCTCAAGTCCCGGATGGAGCAGCTGGAGGTGGCGCTGCAGGAGGAGCGCEST: gi|22066441|gb|BQ816941.1|BQ816941
genomic: TTGGGCCCGCCCGGTCCGCCGCCCCCACCGGTTTCACCAGCAAGACCTCGgtaagctcaa ... tctcacacagTACCTCAAGTCCCGGATGGAGCAGCTGGAGGTGGCGCTGCAGGAGGAGCGC
EST: TTGGGCCCGCCCGGTCCGCCGCCCCCACCGGTTTCACCAGCAAGACCTCG TACCTCAAGTCCCGGATGGAGCAGCTGGAGGTGGCGCTGCAGGAGGAGCGCEST: gi|10778504|gb|AV635184.1|AV635184
genomic: TTGGGCCCGCCCGGTCCGCCGCCCCCACCGGTTTCACCAGCAAGACCTCGgtaagctcaa ... tctcacacagTACCTCAAGTCCCGGATGGAGCAGCTGGAGGTGGCGCTGCAGGAGGAGCGC
EST: TTGGGCCCGCCCGGTCCGCCGCCCCCACCGGTTTCACCAGCAAGACCTCG TACCTCAAGTCCCGGATGGAGCAGCTGGAGGTGGCGCTGCAGGAGGAGCGCEST: gi|23366137|gb|BU653957.1|BU653957
genomic: TTGGGCCCGCCCGGTCCGCCGCCCCCACCGGTTTCACCAGCAAGACCTCGgtaagctcaa ... tctcacacagTACCTCAAGTCCCGGATGGAGCAGCTGGAGGTGGCGCTGCAGGAGGAGCGC
EST: TTGGGCCCGCCCGGTCCGACGTCCCCACCGGTTTCACCAGCAAGACCTCG TACCTCAAGTCCCGGATGGAGCAGCTGGAGGEST: gi|10793202|gb|AV630568.1|AV630568
genomic: TTGGGCCCGCCCGGTCCGCCGCCCCCACCGGTTTCACCAGCAAGACCTCGgtaagctcaa ... tctcacacagTACCTCAAGTCCCGGATGGAGCAGCTGGAGG
EST: TTGGGCCCGCCCGGTCCGCCGCCCCCACCGGTTTCACCAGCAAGACCTCG TACCTCAAGTCCCGGATGGAGCEST: gi|15371153|gb|BI530579.1|BI530579
genomic: TTGGGCCCGCCCGGTCCGCCGCCCCCACCGGTTTCACCAGCAAGACCTCGgtaagctcaa ... tctcacacagTACCTCAAGTCCCGGATGGAGC
EST: TTGGGCCCGCCCGGTCCGCCGCCCCCACCGGTTTCACCAGCAAGACCTCG TACCTCAAGTCCCGGATGGAGCAGCTGGAGGTGGCGCTGCAGGAGGAGCGCEST: gi|15372069|gb|BI531495.1|BI531495
genomic: TTGGGCCCGCCCGGTCCGCCGCCCCCACCGGTTTCACCAGCAAGACCTCGgtaagctcaa ... tctcacacagTACCTCAAGTCCCGGATGGAGCAGCTGGAGGTGGCGCTGCAGGAGGAGCGC
EST: TTGGGCCCGACCGGTCCGCCGCCCCCACCGGTTTCACCAGCAAGACCTTG TACCTCAAGTCCCGGATGGAGCAGCTGGAGGTGGCGCTGCAGGAGGAGCGC
genomic: TTGGGCCCGCCCGGTCCGCCGCCCCCACCGGTTTCACCAGCAAGACCTCGgtaagctcaa ... tctcacacagTACCTCAAGTCCCGGATGGAGCAGCTGGAGGTGGCGCTGCAGGAGGAGCGC
cactaccgccaccgccgcgaaccgccgccaccaccgccgcatttctctcacacagTACCTCAAGTCCCGGATGGAGCAGCTGGAGGTGGCGCTGCAGGAGGAGCGCGAGAGCCGCAAGAAG
ctctcac putative branch site (score: 3)
catttctctc CT-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| acctatgattttgccaattgcgcccaacgtcgccttactgcacttcactaccgccaccgccgcgaaccgccgccaccaccgccgcatttctctcacacagTACCTCAAGTCCCGGATGGAGCAGCTGGAGGTGGCGCTGCAGGAGGAGCGCGAGAGCCGCAAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- -tatgatt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ccaccac