Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...acctcgccaatctctcagctatgaaatcagcatgcccactcataccacccctgtccaacatcaacgcaatctattgtccatttttcgtcatcccaaacagGACTTCGGCTTCGACCCCCTGGGCCTGCTGGACCCCGTGAACAGCGGCGGCTTCATCGAGCCCAAGTGGCTGCAGTACTCTGAGGTCATCCACGCGCGCT

Basic information

species Chlamydomonas reinhardtii
transcript EDO97521
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: EDO97521 (Chlamydomonas reinhardtii), 3'ss of exon 3
lower sequence: GRMZM2G010884_T01 (Zea mays), 3'ss of exon 2
------acct-cgccaatctctcagctatgaaatcagcatgcccactcataccacccctg----tccaacatcaacgcaatctattgtccatttttcgtcatcccaaacagG----------ACTTCGGCTTCGACCCCCTGGGCCTGCTGGACCCCGTGAACAGCGGCGGCTTCATCGAGCCCAAGTGGCTGCAGTACTCTGAGGTCATCCACGCGCGCT
      |||| |||   |  | | ||   |    |||||  ||  ||  || |  |  |      || |     ||       |||||   |  | | |     ||  ||||          |||  ||||||||||| ||||||||   |||||| | |  || ||| ||||||||||||||||||||||||   ||    ||||| |||          
gtacgtacctgcgctcgttgccc-gccccgcgcgcagcaaaccttctgctagcgacgatagaaaccctatgctcacctgcctcattgttgctgctgcatgcatgcatgcagGCTGCCCGGCGACTATGGCTTCGACCCGCTGGGCCTCTCGGACCCGGAGGGCACCGGGGGCTTCATCGAGCCCAAGTGGCTGGCCTATGGCGAGGTGATC----------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|10776071|gb|AV632751.1|AV632751
EST:     TCGGTGCCTCGCAGTCGTCCCTGGCTTACCTGGACGGCTCTCTGCCCGGC                         GACTTCGGCTTCGACCCCCTGGGCCTGCTGGACCCCGTGAACAGCGGCGGC
genomic: TCGGTGCCTCGCAGTCGTCCCTGGCTTACCTGGACGGCTCTCTGCCCGGCgtaagtatac ... tcccaaacagGACTTCGGCTTCGACCCCCTGGGCCTGCTGGACCCCGTGAACAGCGGCGGC
EST: gi|10776705|gb|AV633385.1|AV633385
EST:     TCGGTGCCTCGCAGTCGTCCCTGGCTTACCTGGACGGCTCTCTGCCCGGC                         GACTTCGGCTTCGACCCCCTGGGCCTGCTGGACCCCGTGAACAGCTGGCTG
genomic: TCGGTGCCTCGCAGTCGTCCCTGGCTTACCTGGACGGCTCTCTGCCCGGCgtaagtatac ... tcccaaacagGACTTCGGCTTCGACCCCCTGGGCCTGCTGGACCCCGTGAACAGC-GGC-G
EST: gi|15369633|gb|BI529059.1|BI529059
EST:     TCGGTGCCTCGCAGTCGTCCCTGGCTTACCTGGACGGCTCTCTGCCCGGC                         GACTTCGGCTTCGACCCCCTGGGCCTGCTGGACCCCGTGAACAGCGGCGGC
genomic: TCGGTGCCTCGCAGTCGTCCCTGGCTTACCTGGACGGCTCTCTGCCCGGCgtaagtatac ... tcccaaacagGACTTCGGCTTCGACCCCCTGGGCCTGCTGGACCCCGTGAACAGCGGCGGC
EST: gi|22063033|gb|BQ815051.1|BQ815051
EST:     TCGGTGCCTCGCAGTCGTCCCTGGCTTACCTGGACGGCTCTCTGCCCGGC                         GACTTCGGCTTCGACCCCCTGGGCCTGCTGGACCCCGTGAACAGCGGCGGC
genomic: TCGGTGCCTCGCAGTCGTCCCTGGCTTACCTGGACGGCTCTCTGCCCGGCgtaagtatac ... tcccaaacagGACTTCGGCTTCGACCCCCTGGGCCTGCTGGACCCCGTGAACAGCGGCGGC
EST: gi|10775195|gb|AV631875.1|AV631875
EST:     TCGGTGCCTCGCAGTCGTCCCTGGCTTACCTGGACGGCTCTCTGCCCGGC                         GACTTCGGCTTCGACCCCCTGGGCCTGCTGGACCCCGTGAACAGCGGCGGC
genomic: TCGGTGCCTCGCAGTCGTCCCTGGCTTACCTGGACGGCTCTCTGCCCGGCgtaagtatac ... tcccaaacagGACTTCGGCTTCGACCCCCTGGGCCTGCTGGACCCCGTGAACAGCGGCGGC
EST: gi|10191248|gb|BE761324.1|BE761324
EST:     TCGGTGCCTCGCAGTCGTCCCTGGCTTACCTGGACGGCTCTCTGCCCGGC                         GACTTCGGCTTCGACCCCCTGGGCCTGCTGGACCCCGTGAACAGCGGCGGC
genomic: TCGGTGCCTCGCAGTCGTCCCTGGCTTACCTGGACGGCTCTCTGCCCGGCgtaagtatac ... tcccaaacagGACTTCGGCTTCGACCCCCTGGGCCTGCTGGACCCCGTGAACAGCGGCGGC
EST: gi|161819180|gb|FC109867.1|FC109867
EST:     CGCAGTCGTCCCGTGGCTTACCTGGACGGCTCTCTGCCCGGC                         GACTTCGGCTTCGACCCCCTGGGCCTGCTGGACCCCGTGAACAGCGGCGGC
genomic: CGCAGTCGTCCC-TGGCTTACCTGGACGGCTCTCTGCCCGGCgtaagtatac ... tcccaaacagGACTTCGGCTTCGACCCCCTGGGCCTGCTGGACCCCGTGAACAGCGGCGGC
EST: gi|161812526|gb|FC099421.1|FC099421
EST:     TCGGTGCCTCGCAGTCGTCCCTGGCTTACCTGGACGGCTCTCTGCCCGGC                         GACTTCGGCTTCGACCCCCTGGGCCTGCTGGACCCCGTGAACAGCGGCGGC
genomic: TCGGTGCCTCGCAGTCGTCCCTGGCTTACCTGGACGGCTCTCTGCCCGGCgtaagtatac ... tcccaaacagGACTTCGGCTTCGACCCCCTGGGCCTGCTGGACCCCGTGAACAGCGGCGGC
EST: gi|161814252|gb|FC102057.1|FC102057
EST:     TCGGTGCCTCGCAGTCGTCCCTGGCTTACCTGGACGGCTCTCTGCCCGGC                         GACTTCGGCTTCGACCCCCTGGGCCTGCTGGACCCCGTGAACAGCGGCGGC
genomic: TCGGTGCCTCGCAGTCGTCCCTGGCTTACCTGGACGGCTCTCTGCCCGGCgtaagtatac ... tcccaaacagGACTTCGGCTTCGACCCCCTGGGCCTGCTGGACCCCGTGAACAGCGGCGGC
EST: gi|8287140|gb|BE024699.1|BE024699
EST:     TCGGTGCCTCGCAGTCGTCCCTGGCTTACCTGGACGGCTCTCTGCCCGGC                         GACTTCGGCTTCGACCCCCTGGGCCTGCTGGACCCCGTGAACAGCGGCGGC
genomic: TCGGTGCCTCGCAGTCGTCCCTGGCTTACCTGGACGGCTCTCTGCCCGGCgtaagtatac ... tcccaaacagGACTTCGGCTTCGACCCCCTGGGCCTGCTGGACCCCGTGAACAGCGGCGGC
EST: gi|161792543|gb|FC081797.1|FC081797
EST:     TCGGTGCCTCGCAGTCGTCCCTGGCTTACCTGGACGGCTCTCTGCCCGGC                         GACTTCGGCTTCGACCCCCTGGGCCTGCTGGACCCCGTGAACAGCGGCGGC
genomic: TCGGTGCCTCGCAGTCGTCCCTGGCTTACCTGGACGGCTCTCTGCCCGGCgtaagtatac ... tcccaaacagGACTTCGGCTTCGACCCCCTGGGCCTGCTGGACCCCGTGAACAGCGGCGGC
EST: gi|10780202|gb|AV636882.1|AV636882
EST:     TCGGTGCCTCGCAGTCGTCCCTGGCTTACCTGGACGGCTCTCTGCCCGGC                         GACTTCGGCTTCGACCCCCTGGGCCTGCTGGACCCCGTGAACAGCGGCGGC
genomic: TCGGTGCCTCGCAGTCGTCCCTGGCTTACCTGGACGGCTCTCTGCCCGGCgtaagtatac ... tcccaaacagGACTTCGGCTTCGACCCCCTGGGCCTGCTGGACCCCGTGAACAGCGGCGGC
EST: gi|161803217|gb|FC093236.1|FC093236
EST:     TCGGTGCCTCGCAGTCGTCCCTGGCTTACCTGGACGGCTCTCTGCCCGGC                         GACTTCGGCTTCGACCCCCTGGGCCTGCTGGACCCCGTGAACAGCGGCGGC
genomic: TCGGTGCCTCGCAGTCGTCCCTGGCTTACCTGGACGGCTCTCTGCCCGGCgtaagtatac ... tcccaaacagGACTTCGGCTTCGACCCCCTGGGCCTGCTGGACCCCGTGAACAGCGGCGGC
EST: gi|7615600|gb|AW721040.1|AW721040
EST:     TCGGTGCCTCGCAGTCGTCCCTGGCTTACCTGGACGGCTCTCTGCCCGGC                         GACTTCGGCTTCGACCCCCTGGGCCTGCTGGACCCCGTGAACAGCGGCGGC
genomic: TCGGTGCCTCGCAGTCGTCCCTGGCTTACCTGGACGGCTCTCTGCCCGGCgtaagtatac ... tcccaaacagGACTTCGGCTTCGACCCCCTGGGCCTGCTGGACCCCGTGAACAGCGGCGGC
EST: gi|10776419|gb|AV633099.1|AV633099
EST:     TCGGTGCCTCGCAGTCGTCCCTGGCTTACCTGGACGGCTCTCTGCCCGGC                         GACTTCGGCTTCGACCCCCTGGGCCTGCTGGACCCCGTGAACAGCGGCGGC
genomic: TCGGTGCCTCGCAGTCGTCCCTGGCTTACCTGGACGGCTCTCTGCCCGGCgtaagtatac ... tcccaaacagGACTTCGGCTTCGACCCCCTGGGCCTGCTGGACCCCGTGAACAGCGGCGGC
EST: gi|161816281|gb|FC102117.1|FC102117
EST:     CGCAGTCGTCCCTGGCTTACCTGGACGGCTCTCTGCCCGGC                         GACTTCGGCTTCGACCCCCTGGGCCTGCTGGACCCCGTGAACAGCGGCGGC
genomic: CGCAGTCGTCCCTGGCTTACCTGGACGGCTCTCTGCCCGGCgtaagtatac ... tcccaaacagGACTTCGGCTTCGACCCCCTGGGCCTGCTGGACCCCGTGAACAGCGGCGGC
EST: gi|22071312|gb|BQ820650.1|BQ820650
EST:     TCGGTGCCTCGCAGTCGTCCCTGGCTTACCTGGACGGCTCTCTGCCCGGC                         GACTTCGGCTTCGACCCCCTGGGCCTGCTGGACCCCGTGAACAGCGGCGGC
genomic: TCGGTGCCTCGCAGTCGTCCCTGGCTTACCTGGACGGCTCTCTGCCCGGCgtaagtatac ... tcccaaacagGACTTCGGCTTCGACCCCCTGGGCCTGCTGGACCCCGTGAACAGCGGCGGC
EST: gi|49470465|gb|BP098326.1|BP098326
EST:     TCGGTGCCTCGCAGTCGTCCCTGGCTTACCTGGACGGCTCTCTGCCCGGC                         GACTTCGGCTTCGACCCCCTGGGCCTGCTGGACCCCGTGAACAGCGGCGGC
genomic: TCGGTGCCTCGCAGTCGTCCCTGGCTTACCTGGACGGCTCTCTGCCCGGCgtaagtatac ... tcccaaacagGACTTCGGCTTCGACCCCCTGGGCCTGCTGGACCCCGTGAACAGCGGCGGC
EST: gi|6544235|gb|AV390019.1|AV390019
EST:     TCGGTGCCTCGCAGTCGTCCCTGGCTTACCTGGACGGCTCTCTGCCCGGC                         GACTTCGGCTTCGACCCCCTGGGCCTGCTGGACCCCGTGAACAGCGGCGGC
genomic: TCGGTGCCTCGCAGTCGTCCCTGGCTTACCTGGACGGCTCTCTGCCCGGCgtaagtatac ... tcccaaacagGACTTCGGCTTCGACCCCCTGGGCCTGCTGGACCCCGTGAACAGCGGCGGC
EST: gi|9460442|gb|BE453233.1|BE453233
EST:     TCGGTGCCTCGCAGTCGTCCCTGGCTTACCTGGACGGCTCTCTGCCCGGC                         GACTTCGGCTTCGACCCCCTGGGCCTGCTGGACCCCGTGAACAGCGGCGGC
genomic: TCGGTGCCTCGCAGTCGTCCCTGGCTTACCTGGACGGCTCTCTGCCCGGCgtaagtatac ... tcccaaacagGACTTCGGCTTCGACCCCCTGGGCCTGCTGGACCCCGTGAACAGCGGCGGC
EST: gi|6544994|gb|AV390778.1|AV390778
EST:     TCGGTGCCTCGCAGTCGTCCCTGGCTTACCTGGACGGCTCTCTGCCCGGC                         GACTTCGGCTTCGACCCCCTGGGCCTGCTGGACCCCGTGAACAGCGGCGGC
genomic: TCGGTGCCTCGCAGTCGTCCCTGGCTTACCTGGACGGCTCTCTGCCCGGCgtaagtatac ... tcccaaacagGACTTCGGCTTCGACCCCCTGGGCCTGCTGGACCCCGTGAACAGCGGCGGC
EST: gi|161792947|gb|FC081265.1|FC081265
EST:     TCGGTGCCTCGCAGTCGTCCCTGGCTTACCTGGACGGCTCTCTGCCCGGC                         GACTTCGGCTTCGACCCCCTGGGCCTGCTGGACCCCGTGAACAGCGGCGGC
genomic: TCGGTGCCTCGCAGTCGTCCCTGGCTTACCTGGACGGCTCTCTGCCCGGCgtaagtatac ... tcccaaacagGACTTCGGCTTCGACCCCCTGGGCCTGCTGGACCCCGTGAACAGCGGCGGC
EST: gi|22070078|gb|BQ819511.1|BQ819511
EST:     TCGGTGCCTCGCAGTCGTCCCTGGCTTACCTGGACGGCTCTCTGCCCGGC                         GACTTCGGCTTCGACCCCCTGGGCCTGCTGGACCCCGTGAACAGCGGCGGC
genomic: TCGGTGCCTCGCAGTCGTCCCTGGCTTACCTGGACGGCTCTCTGCCCGGCgtaagtatac ... tcccaaacagGACTTCGGCTTCGACCCCCTGGGCCTGCTGGACCCCGTGAACAGCGGCGGC
EST: gi|161799673|gb|FC085207.1|FC085207
EST:     TCGGTGCCTCGCAGTCGTCCCTGGCTTACCTGGACGGCTCTCTGCCCGGC                         GACTTCGGCTTCTACCCCCTGGGCCTGCTGGACCCCGTGAACAGCGGCGGC
genomic: TCGGTGCCTCGCAGTCGTCCCTGGCTTACCTGGACGGCTCTCTGCCCGGCgtaagtatac ... tcccaaacagGACTTCGGCTTCGACCCCCTGGGCCTGCTGGACCCCGTGAACAGCGGCGGC
EST: gi|10768789|gb|AV619614.1|AV619614
EST:     TCGGTGCCTCGCAGTCGTCCCTGGCTTACCTGGACGGCTCTCTGCCCGGC                         GACTTCGGCTTCGACCCCCTGGGCCTGCTGGACCCCGTGAACAGCGGCGGC
genomic: TCGGTGCCTCGCAGTCGTCCCTGGCTTACCTGGACGGCTCTCTGCCCGGCgtaagtatac ... tcccaaacagGACTTCGGCTTCGACCCCCTGGGCCTGCTGGACCCCGTGAACAGCGGCGGC
EST: gi|10776309|gb|AV632989.1|AV632989
EST:     TCGGTGCCTCGCAGTCGTCCCTGGCTTACCTGGACGGCTCTCTGCCCGGC                         GACTTCGGCTTCGACCCCCTGGGCCTGCTGGACCCCGTGAACAGCGGCGGC
genomic: TCGGTGCCTCGCAGTCGTCCCTGGCTTACCTGGACGGCTCTCTGCCCGGCgtaagtatac ... tcccaaacagGACTTCGGCTTCGACCCCCTGGGCCTGCTGGACCCCGTGAACAGCGGCGGC
EST: gi|161819941|gb|FC107508.1|FC107508
EST:     TCGGTGCCTCGCAGTCGTCCCTGGCTTACCTGGACGGCTCTCTGCCCGGC                         GACTTCGGCTTCGACCCCCTGGGCCTGCTGGACCCCGTGAACAGCGGCGGC
genomic: TCGGTGCCTCGCAGTCGTCCCTGGCTTACCTGGACGGCTCTCTGCCCGGCgtaagtatac ... tcccaaacagGACTTCGGCTTCGACCCCCTGGGCCTGCTGGACCCCGTGAACAGCGGCGGC
EST: gi|6545968|gb|AV391752.1|AV391752
EST:     TCGGTGCCTCGCAGTCGTCCCTGGCTTACCTGGACGGCTCTCTGCCCGGC                         GACTTCGGCTTCGACCCCCTGGGCCTGCTGGACCCCGTGAACAGCGGCGGC
genomic: TCGGTGCCTCGCAGTCGTCCCTGGCTTACCTGGACGGCTCTCTGCCCGGCgtaagtatac ... tcccaaacagGACTTCGGCTTCGACCCCCTGGGCCTGCTGGACCCCGTGAACAGCGGCGGC
EST: gi|10790625|gb|AV627991.1|AV627991
EST:     TCGGTGCCTCGCAGTCGTCCCTGGCTTACCTGGACGGCTCTCTGCCCGGC                         GACTTCGGCTTCGACCCCCTGGGCCTGCTGGACCCCGTGAACAGCGGCGGC
genomic: TCGGTGCCTCGCAGTCGTCCCTGGCTTACCTGGACGGCTCTCTGCCCGGCgtaagtatac ... tcccaaacagGACTTCGGCTTCGACCCCCTGGGCCTGCTGGACCCCGTGAACAGCGGCGGC
EST: gi|10780617|gb|AV637297.1|AV637297
EST:     TCGGTGCCTCGCAGTCGTCCCTGGCTTACCTGGACGGCTCTCTGCCCGGC                         GACTTCGGCTTCGACCCCCTGGGCCTGCTGGACCCCGTGAACAGCGGCGGC
genomic: TCGGTGCCTCGCAGTCGTCCCTGGCTTACCTGGACGGCTCTCTGCCCGGCgtaagtatac ... tcccaaacagGACTTCGGCTTCGACCCCCTGGGCCTGCTGGACCCCGTGAACAGCGGCGGC
EST: gi|10778577|gb|AV635257.1|AV635257
EST:     TCGGTGCCTCGCAGTCGTCCCTGGCTTACCTGGACGGCTCTCTGCCCGGC                         GACTTCGGCTTCGACCCCCTGGGCCTGCTGGACCCCGTGAACAGCGGCGGC
genomic: TCGGTGCCTCGCAGTCGTCCCTGGCTTACCTGGACGGCTCTCTGCCCGGCgtaagtatac ... tcccaaacagGACTTCGGCTTCGACCCCCTGGGCCTGCTGGACCCCGTGAACAGCGGCGGC
EST: gi|7686823|gb|AW757471.1|AW757471
EST:     TCGGTGCCTCGCAGTCGTCCCTGGCTTACCTGGACGGCTCTCTGCCCGGC                         GACTTCGGCTTCGACCCCCTGGGCCTGCTGGACCCCGTGAACAGCGGCGGC
genomic: TCGGTGCCTCGCAGTCGTCCCTGGCTTACCTGGACGGCTCTCTGCCCGGCgtaagtatac ... tcccaaacagGACTTCGGCTTCGACCCCCTGGGCCTGCTGGACCCCGTGAACAGCGGCGGC
EST: gi|7687556|gb|AW758202.1|AW758202
EST:     TCGGTGCCTCGCAGTCGTCCCTGGCTTACCTGGACGGCTCTCTGCCCGGC                         GACTTCGGCTTCGACCCCCTGGGCCTGCTGGACCCCGTGAACAGCGGCGGC
genomic: TCGGTGCCTCGCAGTCGTCCCTGGCTTACCTGGACGGCTCTCTGCCCGGCgtaagtatac ... tcccaaacagGACTTCGGCTTCGACCCCCTGGGCCTGCTGGACCCCGTGAACAGCGGCGGC
EST: gi|6542717|gb|AV388501.1|AV388501
EST:     TCGGTGCCTCGCAGTCGTCCCTGGCTTACCTGGACGGCTCTCTGCCCGGC                         GACTTCGGCTTCGACCCCCTGGGCCTGCTGGACCCCGTGAACAGCGGCGGC
genomic: TCGGTGCCTCGCAGTCGTCCCTGGCTTACCTGGACGGCTCTCTGCCCGGCgtaagtatac ... tcccaaacagGACTTCGGCTTCGACCCCCTGGGCCTGCTGGACCCCGTGAACAGCGGCGGC
EST: gi|10781507|gb|AV638187.1|AV638187
EST:     TCGGTGCCTCGCAGTCGTCCCTGGCTTACCTGGACGGCTCTCTGCCCGGC                         GACTTCGGCTTCGACCCCCTGGGCCTGCTGGACCCCGTGAACAGCGGCGGC
genomic: TCGGTGCCTCGCAGTCGTCCCTGGCTTACCTGGACGGCTCTCTGCCCGGCgtaagtatac ... tcccaaacagGACTTCGGCTTCGACCCCCTGGGCCTGCTGGACCCCGTGAACAGCGGCGGC
EST: gi|161792483|gb|FC080411.1|FC080411
EST:     TCGGTGCCTCGCAGTCGTCCCTGGCTTACCTGGACGGCTCTCTGCCCGGC                         GACTTCGGCTTCGACCCCCTGGGCCTGCTGGACCCCGTGAACAGCGGCGGC
genomic: TCGGTGCCTCGCAGTCGTCCCTGGCTTACCTGGACGGCTCTCTGCCCGGCgtaagtatac ... tcccaaacagGACTTCGGCTTCGACCCCCTGGGCCTGCTGGACCCCGTGAACAGCGGCGGC
EST: gi|10768838|gb|AV619663.1|AV619663
EST:     TCGGTGCCTCGCAGTCGTCCCTGGCTTACCTGGACGGCTCTCTGCCCGGC                         GACTTCGGCTTCGACCCCCTGGGCCTGCTGGACCCCGTGAACAGCGGCGGC
genomic: TCGGTGCCTCGCAGTCGTCCCTGGCTTACCTGGACGGCTCTCTGCCCGGCgtaagtatac ... tcccaaacagGACTTCGGCTTCGACCCCCTGGGCCTGCTGGACCCCGTGAACAGCGGCGGC
EST: gi|22057958|gb|BQ812795.1|BQ812795
EST:     TCGGTGCCTCGCAGTCGTCCCTGGCTTACCTGGACGGCTCTCTGCCCGGC                         GACTTCGGCTTCGACCCCCTGGGCCTGCTGGACCCCGTGAACAGCGGCGGC
genomic: TCGGTGCCTCGCAGTCGTCCCTGGCTTACCTGGACGGCTCTCTGCCCGGCgtaagtatac ... tcccaaacagGACTTCGGCTTCGACCCCCTGGGCCTGCTGGACCCCGTGAACAGCGGCGGC
EST: gi|7426764|gb|AW660937.1|AW660937
EST:     TCGGTGCCTCGCAGTCGTCCCTGGCTTACCTGGACGGCTCTCTGCCCGGC                         GACTTCGGCTTCGACCCCCTGGGCCTGCTGGACCCCGTGAACAGCGGCGGC
genomic: TCGGTGCCTCGCAGTCGTCCCTGGCTTACCTGGACGGCTCTCTGCCCGGCgtaagtatac ... tcccaaacagGACTTCGGCTTCGACCCCCTGGGCCTGCTGGACCCCGTGAACAGCGGCGGC
EST: gi|6541167|gb|AV386951.1|AV386951
EST:     TCGGTGCCTCGCAGTCGTCCCTGGCTTACCTGGACGGCTCTCTGCCCGGC                         GACTTCGGCTTCGACCCCCTGGGCCTGCTGGACCCCGTGAACAGCGGCGGC
genomic: TCGGTGCCTCGCAGTCGTCCCTGGCTTACCTGGACGGCTCTCTGCCCGGCgtaagtatac ... tcccaaacagGACTTCGGCTTCGACCCCCTGGGCCTGCTGGACCCCGTGAACAGCGGCGGC
EST: gi|10773982|gb|AV624805.1|AV624805
EST:     TCGGTGCCTCGCAGTCGTCCCTGGCTTACCTGGACGGCTCTCTGCCCGGC                         GACTTCGGCTTCGACCCCCTGGGCCTGCTGGACCCCGTGAACAGCGGCGGC
genomic: TCGGTGCCTCGCAGTCGTCCCTGGCTTACCTGGACGGCTCTCTGCCCGGCgtaagtatac ... tcccaaacagGACTTCGGCTTCGACCCCCTGGGCCTGCTGGACCCCGTGAACAGCGGCGGC
EST: gi|10777204|gb|AV633884.1|AV633884
EST:     TCGGTGCCTCGCAGTCGTCCCTGGCTTACCTGGACGGCTCTCTGCCCGGC                         GACTTCGGCTTCGACCCCCTGGGCCTGCTGGACCCCGTGAACAGCGGCGGC
genomic: TCGGTGCCTCGCAGTCGTCCCTGGCTTACCTGGACGGCTCTCTGCCCGGCgtaagtatac ... tcccaaacagGACTTCGGCTTCGACCCCCTGGGCCTGCTGGACCCCGTGAACAGCGGCGGC
EST: gi|161813946|gb|FC105586.1|FC105586
EST:     TCGGTGCCTCGCAGTCGTCCCTGGCTTACCTGGACGGCTCTCTGCCCGGC                         GACTTCGGCTTCGACCCCCTGGGCCTGCTGGACCCCGTGAACAGCGGCGGC
genomic: TCGGTGCCTCGCAGTCGTCCCTGGCTTACCTGGACGGCTCTCTGCCCGGCgtaagtatac ... tcccaaacagGACTTCGGCTTCGACCCCCTGGGCCTGCTGGACCCCGTGAACAGCGGCGGC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cacccctgtccaacatcaacgcaatctattgtccatttttcgtcatcccaaacagGACTTCGGCTTCGACCCCCTGGGCCTGCTGGACCCCGTGAACAGCGGCGGCTTCATCGAGCCCAAGTGGCTGCAGTACTCTGAGGTCATCCACGCGCGCT
                                   tttttcgtcatccc  CT-rich tract
                      aatctatt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
acctcgccaatctctcagctatgaaatcagcatgcccactcataccacccctgtccaacatcaacgcaatctattgtccatttttcgtcatcccaaacagGACTTCGGCTTCGACCCCCTGGGCCTGCTGGACCCCGTGAACAGCGGCGGCTTCATCGAGCCCAAGTGGCTGCAGTACTCTGAGGTCATCCACGCGCGCT

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  CTGCAG
- - - - - tctctca
- - - - - - - - - - - - - - -gcatgcc
- - - - - - - - - - - - - - - - - - -actcata
- - - - - - - - - - - - - - - - - - - - - - - - - - - - -acatcaa