1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
gtgagtgagggcacggaccttgcggtgccggagaaatttcttgggccagcggaaggtgctgaactcgcaacagctgttgcgtgcgggctcgcgtgtggtgtatattgttccagtaaacccatgcagcatttgcagtactcgaatgctggttgagttggtcaagctcactcagctcttgacatgcagGTGGTGTCGTACAAGGAGCTTTACGGCTGGACTATGGACGAGATTGTGTCGCAGATCGGCACTAAGAACAACTGCACCTTCTGCGGCGTCTTCCGGCGGC
species | Chlamydomonas reinhardtii |
transcript | EDO97463 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: CGCTGGAGACGGTCAAGCGCAACGAGCAGCAGTACGGCATTCCGCTCAAG GTGGTGTCGTACAAGGAGCEST: gi|161805161|gb|FC089242.1|FC089242
genomic: CGCTGGAGACGGTCAAGCGCAACGAGCAGCAGTACGGCATTCCGCTCAAGgtgagtgagg ... tgacatgcagGTGGTGTCGTACAAGGAGC
EST: CGCTGGAGACGGTCAAGCGCAACGAGCAGCAGTACGGCATTCCGCTCAAG GTGGTGTCGTACAAGGAGCTTTACGGCTGGACTATGGACGAGATTGTGTCGEST: gi|15699525|gb|BI723830.1|BI723830
genomic: CGCTGGAGACGGTCAAGCGCAACGAGCAGCAGTACGGCATTCCGCTCAAGgtgagtgagg ... tgacatgcagGTGGTGTCGTACAAGGAGCTTTACGGCTGGACTATGGACGAGATTGTGTCG
EST: CGCTGGAGACGGTCAAGCGCAACGAGCAGCAGTACGGCATTCCGCTCAAG GTGGTGTCGTACAAGGAGCTTTACGGCTGGACTATGGACGAGATTGTGTCGEST: gi|16072208|gb|BI874204.1|BI874204
genomic: CGCTGGAGACGGTCAAGCGCAACGAGCAGCAGTACGGCATTCCGCTCAAGgtgagtgagg ... tgacatgcagGTGGTGTCGTACAAGGAGCTTTACGGCTGGACTATGGACGAGATTGTGTCG
EST: CGCTGGAGACGGTCAAGCGCAACGAGCAGCAGTACGGCATTCCGCTCAAG GTGGTGTCGTACAAGGAGCTTTACGGCTGGACTATGGACGAGATTGTGTCGEST: gi|15699523|gb|BI723828.1|BI723828
genomic: CGCTGGAGACGGTCAAGCGCAACGAGCAGCAGTACGGCATTCCGCTCAAGgtgagtgagg ... tgacatgcagGTGGTGTCGTACAAGGAGCTTTACGGCTGGACTATGGACGAGATTGTGTCG
EST: CGCTGGAGACGGTCAAGCGCAACGAGCAGCAGTACGGCATTCCGCTCAAG GTGGTGTCGTACAAGGAGCTTTACGGCTGGACTATGGACGAGATTGTGTCGEST: gi|15699524|gb|BI723829.1|BI723829
genomic: CGCTGGAGACGGTCAAGCGCAACGAGCAGCAGTACGGCATTCCGCTCAAGgtgagtgagg ... tgacatgcagGTGGTGTCGTACAAGGAGCTTTACGGCTGGACTATGGACGAGATTGTGTCG
EST: CGCTGGAGACGGTCAAGCGCAACGAGCAGCAGTACGGCATTCCGCTCAAG GTGGTGTCGTACAAGGAGCTTTACGGCTGGACTATGGACGAGATTGTGTCGEST: gi|14239268|gb|BG858084.1|BG858084
genomic: CGCTGGAGACGGTCAAGCGCAACGAGCAGCAGTACGGCATTCCGCTCAAGgtgagtgagg ... tgacatgcagGTGGTGTCGTACAAGGAGCTTTACGGCTGGACTATGGACGAGATTGTGTCG
EST: CGCTGGAGACGGTCAAGCGCAACGAGCAGCAGTACGGCATTCCGCTCAAG GTGGTGTCGTACAAGGAGCTTTACGGCTGGACTATGGACGAGATTGTGTCGEST: gi|14229546|gb|BG848362.1|BG848362
genomic: CGCTGGAGACGGTCAAGCGCAACGAGCAGCAGTACGGCATTCCGCTCAAGgtgagtgagg ... tgacatgcagGTGGTGTCGTACAAGGAGCTTTACGGCTGGACTATGGACGAGATTGTGTCG
EST: CGCTGGAGACGGTCAAGCGCAACGAGCAGCAGTACGGCATTCCGCTCAAG GTGGTGTCGTACAAGGAGCTTTACGGCTGGACTATGGACGAGATTGTGTCG
genomic: CGCTGGAGACGGTCAAGCGCAACGAGCAGCAGTACGGCATTCCGCTCAAGgtgagtgagg ... tgacatgcagGTGGTGTCGTACAAGGAGCTTTACGGCTGGACTATGGACGAGATTGTGTCG
gcagtactcgaatgctggttgagttggtcaagctcactcagctcttgacatgcagGTGGTGTCGTACAAGGAGCTTTACGGCTGGACTATGGACGAGATTGTGTCGCAGATCGGCACTAAGAACAACTGCACCTTCTGCGGCGTCTTCCGGCGGC
tcttgac putative branch site (score: 3)
ctctt CT-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgagtgagggcacggaccttgcggtgccggagaaatttcttgggccagcggaaggtgctgaactcgcaacagctgttgcgtgcgggctcgcgtgtggtgtatattgttccagtaaacccatgcagcatttgcagtactcgaatgctggttgagttggtcaagctcactcagctcttgacatgcagGTGGTGTCGTACAAGGAGCTTTACGGCTGGACTATGGACGAGATTGTGTCGCAGATCGGCACTAAGAACAACTGCACCTTCTGCGGCGTCTTCCGGCGGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC