1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...aagcagcacaaaagccccgaacacgcgtcccgccaccccattcctgcacccccctcccgtcctcctcacccccccccaaaactgtcctgtccccccacagCGCCTGGGCCTGGACGTGACGGTGGTGGACCGGCCCTGGGGCGAGGGCGCAGACGAGGGCGCGCTGGAGGAGCTCCTGCGCAAGGACACGGGCAAGAAGA
species | Chlamydomonas reinhardtii |
transcript | EDO97195 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: TCTGCTTCCGCTACGGCCTGTTCTCTCACCTGTGGATTGACATGATGCAG CGCCTGGGCCTGGACGTGACGGTGGTGGACCGGCCCTGGGGCGAGGGCGCAEST: gi|22053366|gb|BQ810693.1|BQ810693
genomic: TCTGCTTCCGCTACGGCCTGTTCTCTCACCTGTGGATTGACATGATGCAGgtgcgtatgc ... ccccccacagCGCCTGGGCCTGGACGTGACGGTGGTGGACCGGCCCTGGGGCGAGGGCGCA
EST: TCTGCTTCCGCTACGGCCTGTTCTCTCACCTGTGGATTGACATGATGCAG CGCCTGGGCCTGGACGTGACGGTGGTGGACCGGCCCTGGGGCGAGGGCGCAEST: gi|16433645|gb|BI998871.1|BI998871
genomic: TCTGCTTCCGCTACGGCCTGTTCTCTCACCTGTGGATTGACATGATGCAGgtgcgtatgc ... ccccccacagCGCCTGGGCCTGGACGTGACGGTGGTGGACCGGCCCTGGGGCGAGGGCGCA
EST: TCTGCTTCCGCTACGGCCTGTTCTCTCACCTGTGGATTGACATGATGCAG CGCCTGGGCCTGGACGTGACGGTGGTGGACCGGCCCTGGGGCGAGGGCGCAEST: gi|15697760|gb|BI722065.1|BI722065
genomic: TCTGCTTCCGCTACGGCCTGTTCTCTCACCTGTGGATTGACATGATGCAGgtgcgtatgc ... ccccccacagCGCCTGGGCCTGGACGTGACGGTGGTGGACCGGCCCTGGGGCGAGGGCGCA
EST: TCTGCTTCCGCTACGGCCTGTTCTCTCACCTGTGGATTGACATGATGCAG CGCCTGGGCCTGGACGTGACGGTGGTGGANCGGCCCTGGGGCGAGGGCGCAEST: gi|15700525|gb|BI724814.1|BI724814
genomic: TCTGCTTCCGCTACGGCCTGTTCTCTCACCTGTGGATTGACATGATGCAGgtgcgtatgc ... ccccccacagCGCCTGGGCCTGGACGTGACGGTGGTGGACCGGCCCTGGGGCGAGGGCGCA
EST: TCTGCTTCCGCTACGGCCTGTTCTCTCACCTGTGGATTGACATGATGCAG CGCCTGGGCCTGGACGTGACGGTGGTGGACCGGCCCTGGGGCGAGGGCGCA
genomic: TCTGCTTCCGCTACGGCCTGTTCTCTCACCTGTGGATTGACATGATGCAGgtgcgtatgc ... ccccccacagCGCCTGGGCCTGGACGTGACGGTGGTGGACCGGCCCTGGGGCGAGGGCGCA
gcacccccctcccgtcctcctcacccccccccaaaactgtcctgtccccccacagCGCCTGGGCCTGGACGTGACGGTGGTGGACCGGCCCTGGGGCGAGGGCGCAGACGAGGGCGCGCTGGAGGAGCTCCTGCGCAAGGACACGGGCAAGAAGA
tcctcac putative branch site (score: 2)
ctgtcctgtcccccc putative PPT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aagcagcacaaaagccccgaacacgcgtcccgccaccccattcctgcacccccctcccgtcctcctcacccccccccaaaactgtcctgtccccccacagCGCCTGGGCCTGGACGTGACGGTGGTGGACCGGCCCTGGGGCGAGGGCGCAGACGAGGGCGCGCTGGAGGAGCTCCTGCGCAAGGACACGGGCAAGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG