1 5' 3' | 2 5' 3' | 3 5' 3' |
gtgagtgcctgagtgcccgcttgtgacgccggccccggctcaatttttggaaactgtgctaagctgcctgtcccacgaatccggcccccaaaacctcatagcaacatactcacgacctggcctgtaacttcccatagGGCGTCAAGTCCACGCCGACCTTCCGCATGTACCGCAACGGCGAGGTGGTGGCCAGCGCCTCGGGCGCGCGCGAGAGCAAGGTGCTGCCGGTGCTGATTG
species | Chlamydomonas reinhardtii |
transcript | EDO97015 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: AGCTGACGGGGGACCACTCCCCGGAGACCAAGAAACTCATGGTCTCGTGG GGCGTCAAGTCCACGCCGACCTTCCGCATGTACCGCAACGGCGAGGTGGTGEST: gi|10771041|gb|AV621864.1|AV621864
genomic: AGCTGACGGGGGACCACTCCCCGGAGACCAAGAAACTCATGGTCTCGTGGgtgagtgcct ... cttcccatagGGCGTCAAGTCCACGCCGACCTTCCGCATGTACCGCAACGGCGAGGTGGTG
EST: AGCTGACGGGGGACCACTCCCCGGAGACCAAGAAACTCATGGTCTCGTGG GGCGTCAAGTCCACGCCGACCTTCCGCATGTACCGCAACGGCGAGGTGGTGEST: gi|49462098|gb|BP090011.1|BP090011
genomic: AGCTGACGGGGGACCACTCCCCGGAGACCAAGAAACTCATGGTCTCGTGGgtgagtgcct ... cttcccatagGGCGTCAAGTCCACGCCGACCTTCCGCATGTACCGCAACGGCGAGGTGGTG
EST: AGCTGACGGGGGACCACTCCCCGGAGACCAAGAAACTCATGGTCTCGTGG GGCGTCAAGTCCACGCCGACCTTCCGCATGTACCGCAACGGCGAGGTGGTGEST: gi|10790511|gb|AV627877.1|AV627877
genomic: AGCTGACGGGGGACCACTCCCCGGAGACCAAGAAACTCATGGTCTCGTGGgtgagtgcct ... cttcccatagGGCGTCAAGTCCACGCCGACCTTCCGCATGTACCGCAACGGCGAGGTGGTG
EST: AGCTGACGGGGGACCACTCCCCGGAGACCAAGAAACTCATGGTCTCGTGG GGCGTCAAGTCCACGCCGACCTTCCGCATGTACCGCAACGGCGAGGTGGTG
genomic: AGCTGACGGGGGACCACTCCCCGGAGACCAAGAAACTCATGGTCTCGTGGgtgagtgcct ... cttcccatagGGCGTCAAGTCCACGCCGACCTTCCGCATGTACCGCAACGGCGAGGTGGTG
ggcccccaaaacctcatagcaacatactcacgacctggcctgtaacttcccatagGGCGTCAAGTCCACGCCGACCTTCCGCATGTACCGCAACGGCGAGGTGGTGGCCAGCGCCTCGGGCGCGCGCGAGAGCAAGGTGCTGCCGGTGCTGATTG
cttcccat CT-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgagtgcctgagtgcccgcttgtgacgccggccccggctcaatttttggaaactgtgctaagctgcctgtcccacgaatccggcccccaaaacctcatagcaacatactcacgacctggcctgtaacttcccatagGGCGTCAAGTCCACGCCGACCTTCCGCATGTACCGCAACGGCGAGGTGGTGGCCAGCGCCTCGGGCGCGCGCGAGAGCAAGGTGCTGCCGGTGCTGATTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT