1 5' 3' | 2 5' 3' | 3 5' 3' |
...tgcttcagcacggaaaagcaaggggcccaattccatctttggtggttctgtgcgctggtgactgaacctcttctccctcccatttcccgtgcgcccgcagCTGTACTACGACAACCGCTACTGGACCATGTGGAAGCTGCCCATGTTCGGCTGCCGCGACCCCATGCAGGTGCTGCGCGAGATCGTCGCCTGCACCAAGG
species | Chlamydomonas reinhardtii |
transcript | EDO96904 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: AGGCCTACGTGTCCAACGAGTCGGCCATCCGCTTCGGCAGCGTGTCTTGC CTGTACTACGACAACCGCTACTGGACCATGTGGAAGCTGCCCATGTTCGGCEST: gi|7593270|gb|AW707409.1|AW707409
genomic: AGGCCTACGTGTCCAACGAGTCGGCCATCCGCTTCGGCAGCGTGTCTTGCgtaagtcgga ... gcgcccgcagCTGTACTACGACAACCGCTACTGGACCATGTGGAAGCTGCCCATGTTCGGC
EST: AGGCCTACGTGTCCAACGAGTCGGCCATCCGCTTCGGCAGCGTGTCTTGC CTGTACTACGACAACCGCTACTGGACCATGTGGAAGCTGCCCATGTTCGGCEST: gi|6548242|gb|AV394026.1|AV394026
genomic: AGGCCTACGTGTCCAACGAGTCGGCCATCCGCTTCGGCAGCGTGTCTTGCgtaagtcgga ... gcgcccgcagCTGTACTACGACAACCGCTACTGGACCATGTGGAAGCTGCCCATGTTCGGC
EST: AGGCCTACGTGTCCAACGAGTCGGCCATCCGCTTCGGCAGCGTGTCTTGC CTGTACTACGACAACCGCTACTGGACCATGTGGAAGCTGCCCATGTTCGGCEST: gi|6550035|gb|AV395819.1|AV395819
genomic: AGGCCTACGTGTCCAACGAGTCGGCCATCCGCTTCGGCAGCGTGTCTTGCgtaagtcgga ... gcgcccgcagCTGTACTACGACAACCGCTACTGGACCATGTGGAAGCTGCCCATGTTCGGC
EST: AGGCCTACGTGTCCAACGAGTCGGCCATCCGCTTCGGCAGCGTGTCTTGC CTGTACTACGACAACCGCTACTGGACCATGTGGAAGCTGCCCATGTTCGGCEST: gi|7709535|gb|AW772953.1|AW772953
genomic: AGGCCTACGTGTCCAACGAGTCGGCCATCCGCTTCGGCAGCGTGTCTTGCgtaagtcgga ... gcgcccgcagCTGTACTACGACAACCGCTACTGGACCATGTGGAAGCTGCCCATGTTCGGC
EST: AGGCCTACGTGTCCAACGAGTCGGCCATCCGCTTCGGCAGCGTGTCTTGC CTGTACTACGACAACCGCTACTGGACCATGTGGAAGCTGCCCATGTTCGGC
genomic: AGGCCTACGTGTCCAACGAGTCGGCCATCCGCTTCGGCAGCGTGTCTTGCgtaagtcgga ... gcgcccgcagCTGTACTACGACAACCGCTACTGGACCATGTGGAAGCTGCCCATGTTCGGC
ttctgtgcgctggtgactgaacctcttctccctcccatttcccgtgcgcccgcagCTGTACTACGACAACCGCTACTGGACCATGTGGAAGCTGCCCATGTTCGGCTGCCGCGACCCCATGCAGGTGCTGCGCGAGATCGTCGCCTGCACCAAGG
cctcttctccctccca CT-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tgcttcagcacggaaaagcaaggggcccaattccatctttggtggttctgtgcgctggtgactgaacctcttctccctcccatttcccgtgcgcccgcagCTGTACTACGACAACCGCTACTGGACCATGTGGAAGCTGCCCATGTTCGGCTGCCGCGACCCCATGCAGGTGCTGCGCGAGATCGTCGCCTGCACCAAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATC