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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagataatgatggtgacacacctagacctgcggaatgctagaccttacaaacacacacacgtgtgcagtagttcctagtagccagaccggccaatgcatccccactcatcaacagtgcacgcaatgccgcatgagtgcgccacactcactagttactacccgcatgtggccatgccttcaccacctgaagGTGGCATCATGCCTCCGAGGCCGCCATGAACGAGGCACCCAAGGACGAGAAGGGCGAGAAGGTCGCCGGCTTTGTGCCCATGTACAACAACATCCCCGGC

Basic information

species Chlamydomonas reinhardtii
transcript EDO96606
intron # 3
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|15703523|gb|BI727828.1|BI727828
EST:     CTCCGTGGCCCGGGCCACGCAGCTGAGGGCACGATTGGCTCCGAAGGCTG                         GTGGCATCATGCCTCCGAGGCCGCCATGAACGAGGCACCCAAGGACGAGAA
genomic: CTCCGTGGCCCGGGCCACGCAGCTGAGGGCACGATTGGCTCCGAAGGCTGgtgagataat ... ccacctgaagGTGGCATCATGCCTCCGAGGCCGCCATGAACGAGGCACCCAAGGACGAGAA
EST: gi|161818115|gb|FC102276.1|FC102276
EST:     AGGGCACGATTGGCTCCTAAGGCTG                         GTGGCATCATGCCTCCGAGGCCGCCATGAACGAGGCACCCAAGGACGAGAA
genomic: AGGGCACGATTGGCTCCGAAGGCTGgtgagataat ... ccacctgaagGTGGCATCATGCCTCCGAGGCCGCCATGAACGAGGCACCCAAGGACGAGAA
EST: gi|22071732|gb|BQ821070.1|BQ821070
EST:     CTCCGTGGCCCGGGCCACGCAGCTGAGGGCACGATTGGCTCCGAAGGCTG                         GTGGCATCATGCCTCCGAGGCCGCCATGAACGAGGCACCCAAGGACGAGAA
genomic: CTCCGTGGCCCGGGCCACGCAGCTGAGGGCACGATTGGCTCCGAAGGCTGgtgagataat ... ccacctgaagGTGGCATCATGCCTCCGAGGCCGCCATGAACGAGGCACCCAAGGACGAGAA
EST: gi|15696879|gb|BI721184.1|BI721184
EST:     CTCCGTGGCCCGGGCCACGCAGCTGAGGGCACGATTGGCTCCGAAGGCTG                         GTGGCATCATGCCTCCGAGGCCGCCATGAACGAGGCACCCAAGGACGAGAA
genomic: CTCCGTGGCCCGGGCCACGCAGCTGAGGGCACGATTGGCTCCGAAGGCTGgtgagataat ... ccacctgaagGTGGCATCATGCCTCCGAGGCCGCCATGAACGAGGCACCCAAGGACGAGAA
EST: gi|15693063|gb|BI717368.1|BI717368
EST:     CTCCGTGGCCCGGGCCACGCAGCTGAGGGCACGATTGGCTCCGAAGGCTG                         GTGGCATCATGCCTCCGAGGCCGCCATGAACGAGGCACCCAAGGACGAGAA
genomic: CTCCGTGGCCCGGGCCACGCAGCTGAGGGCACGATTGGCTCCGAAGGCTGgtgagataat ... ccacctgaagGTGGCATCATGCCTCCGAGGCCGCCATGAACGAGGCACCCAAGGACGAGAA
EST: gi|10777709|gb|AV634389.1|AV634389
EST:     CTCCGTGGCCCGGGCCACGCAGCTGAGGGCACGATTGGCTCCGAAGGCTG                         GTGGCATCATGCCTCCGAGGCCGCCATGAACGAGGCACCCAAGGACGAGAA
genomic: CTCCGTGGCCCGGGCCACGCAGCTGAGGGCACGATTGGCTCCGAAGGCTGgtgagataat ... ccacctgaagGTGGCATCATGCCTCCGAGGCCGCCATGAACGAGGCACCCAAGGACGAGAA
EST: gi|9210419|gb|BE337334.1|BE337334
EST:     CTCCGTGGCCCGGGCCACGCAGCTGAGGGCACGATTGGCTCCGAAGGCTG                         GTGGCATCATGCCTCCGAGGCCGCCATGAACGAGGCACCCAAGGACGAGAA
genomic: CTCCGTGGCCCGGGCCACGCAGCTGAGGGCACGATTGGCTCCGAAGGCTGgtgagataat ... ccacctgaagGTGGCATCATGCCTCCGAGGCCGCCATGAACGAGGCACCCAAGGACGAGAA
EST: gi|23362385|gb|BU650205.1|BU650205
EST:     CTCCGTGGCCCGGGCCACGCAGCTGAGGGCACGATTGGCTCCGAAGGCTG                         GTGGCATCATGCCTCCGAGGCCGCCATGAACGAGGCACCCAAGGACGAGAA
genomic: CTCCGTGGCCCGGGCCACGCAGCTGAGGGCACGATTGGCTCCGAAGGCTGgtgagataat ... ccacctgaagGTGGCATCATGCCTCCGAGGCCGCCATGAACGAGGCACCCAAGGACGAGAA
EST: gi|16432198|gb|BI997424.1|BI997424
EST:     CTCCGTGGCCCGGGCCACGCAGCTGAGGGCACGATTGGCTCCGAAGGCTG                         GTGGCATCATGCCTCCGAGGCCGCCATGAACGAGGCACCCAAGGACGAGAA
genomic: CTCCGTGGCCCGGGCCACGCAGCTGAGGGCACGATTGGCTCCGAAGGCTGgtgagataat ... ccacctgaagGTGGCATCATGCCTCCGAGGCCGCCATGAACGAGGCACCCAAGGACGAGAA
EST: gi|10776392|gb|AV633072.1|AV633072
EST:     CTCCGTGGCCCGGGCCACGCAGCTGAGGGCACGATTGGCTCCGAAGGCTG                         GTGGCATCATGCCTCCGAGGCCGCCATGAACGAGGCACCCAAGGACGAGAA
genomic: CTCCGTGGCCCGGGCCACGCAGCTGAGGGCACGATTGGCTCCGAAGGCTGgtgagataat ... ccacctgaagGTGGCATCATGCCTCCGAGGCCGCCATGAACGAGGCACCCAAGGACGAGAA
EST: gi|10126522|gb|BE725226.1|BE725226
EST:     CTCCGTGGCCCGGGCCACGCAGCTGAGGGCACGATTGGCTCCGAAGGCTG                         GTGGCATCATGCCTCCGAGGCCGCCATGAACGAGGCACCCAAGGACGAGAA
genomic: CTCCGTGGCCCGGGCCACGCAGCTGAGGGCACGATTGGCTCCGAAGGCTGgtgagataat ... ccacctgaagGTGGCATCATGCCTCCGAGGCCGCCATGAACGAGGCACCCAAGGACGAGAA
EST: gi|15698171|gb|BI722476.1|BI722476
EST:     CTCCGTGGCCCGGGCCACGCAGCTGAGGGCACGATTGGCTCCGAAGGCTG                         GTGGCATCATGCCTCCGAGGCCGCCATGAACGAGGCACCCAAGGACGAGAA
genomic: CTCCGTGGCCCGGGCCACGCAGCTGAGGGCACGATTGGCTCCGAAGGCTGgtgagataat ... ccacctgaagGTGGCATCATGCCTCCGAGGCCGCCATGAACGAGGCACCCAAGGACGAGAA
EST: gi|15694256|gb|BI718561.1|BI718561
EST:     CTCCGTGGCCCGGGCCACGCAGCTGAGGGCACGATTGGCTCCGAAGGCTG                         GTGGCATCATGCCTCCGAGGCCGCCATGAACGAGGCACCCAAGGACGAGAA
genomic: CTCCGTGGCCCGGGCCACGCAGCTGAGGGCACGATTGGCTCCGAAGGCTGgtgagataat ... ccacctgaagGTGGCATCATGCCTCCGAGGCCGCCATGAACGAGGCACCCAAGGACGAGAA
EST: gi|10128238|gb|BE726942.1|BE726942
EST:     CTCCGTGGCCCGGGCCACGCAGCTGAGGGCACGATTGGCTCCGAAGGCTG                         GTGGCATCATGCCTCCGAGGCCGCCATGAACGAGGCACCCAAGGACGAGAA
genomic: CTCCGTGGCCCGGGCCACGCAGCTGAGGGCACGATTGGCTCCGAAGGCTGgtgagataat ... ccacctgaagGTGGCATCATGCCTCCGAGGCCGCCATGAACGAGGCACCCAAGGACGAGAA
EST: gi|23367161|gb|BU654980.1|BU654980
EST:     CTCCGTGGCCCGGGCCACGCAGCTGAGGGCACGATTGGCTCCGAAGGCTG                         GTGGCATCATGCCTCCGAGGCCGCCATGAACGAGGCACCCAAGGACGAGAA
genomic: CTCCGTGGCCCGGGCCACGCAGCTGAGGGCACGATTGGCTCCGAAGGCTGgtgagataat ... ccacctgaagGTGGCATCATGCCTCCGAGGCCGCCATGAACGAGGCACCCAAGGACGAGAA
EST: gi|14231278|gb|BG850094.1|BG850094
EST:     CTCCGTGGCCCGGGCCACGCAGCTGAGGGCACGATTGGCTCCGAAGGCTG                         GTGGCATCATGCCTCCGAGGCCGCCATGAACGAGGCACCCAAGGACGAGAA
genomic: CTCCGTGGCCCGGGCCACGCAGCTGAGGGCACGATTGGCTCCGAAGGCTGgtgagataat ... ccacctgaagGTGGCATCATGCCTCCGAGGCCGCCATGAACGAGGCACCCAAGGACGAGAA
EST: gi|16428820|gb|BI994046.1|BI994046
EST:     CTCCGTGGCCCGGGCCACGCAGCTGAGGGCACGATTGGCTCCGAAGGCTG                         GTGGCATCATGCCTCCGAGGCCGCCATGAACGAGGCACCCAAGGACGAGAA
genomic: CTCCGTGGCCCGGGCCACGCAGCTGAGGGCACGATTGGCTCCGAAGGCTGgtgagataat ... ccacctgaagGTGGCATCATGCCTCCGAGGCCGCCATGAACGAGGCACCCAAGGACGAGAA
EST: gi|23360990|gb|BU648810.1|BU648810
EST:     CTCCGTGGCCCGGGCCACGCAGCTGAGGGCACGATTGGCTCCGAAGGCTG                         GTGGCATCATGCCTCCGAGGCCGCCATGAACGAGGCACCCAAGGACGAGAA
genomic: CTCCGTGGCCCGGGCCACGCAGCTGAGGGCACGATTGGCTCCGAAGGCTGgtgagataat ... ccacctgaagGTGGCATCATGCCTCCGAGGCCGCCATGAACGAGGCACCCAAGGACGAGAA
EST: gi|15696115|gb|BI720420.1|BI720420
EST:     CTCCGTGGCCCGGGCCACGCAGCTGAGGGCACGATTGGCTCCGAAGGCTG                         GTGGCATCATGCCTCCGAGGCCGCCATGAACGAGGCACCCAAGGACGAGAA
genomic: CTCCGTGGCCCGGGCCACGCAGCTGAGGGCACGATTGGCTCCGAAGGCTGgtgagataat ... ccacctgaagGTGGCATCATGCCTCCGAGGCCGCCATGAACGAGGCACCCAAGGACGAGAA
EST: gi|14231284|gb|BG850100.1|BG850100
EST:     CTCCGTGGCCCGGGCCACGCAGCTGAGGGCACGATTGGCTCCGAAGGCTG                         GTGGCATCATGCCTCCGAGGCCGCCATGAACGAGGCACCCAAGGACGAGAA
genomic: CTCCGTGGCCCGGGCCACGCAGCTGAGGGCACGATTGGCTCCGAAGGCTGgtgagataat ... ccacctgaagGTGGCATCATGCCTCCGAGGCCGCCATGAACGAGGCACCCAAGGACGAGAA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgcgccacactcactagttactacccgcatgtggccatgccttcaccacctgaagGTGGCATCATGCCTCCGAGGCCGCCATGAACGAGGCACCCAAGGACGAGAAGGGCGAGAAGGTCGCCGGCTTTGTGCCCATGTACAACAACATCCCCGGC
       cactcac  putative branch site (score: 2)
                                       ccttcacc  putative PPT