1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
gtaagtctagcatcgcgacatcggcttcattttggaccacttcttaaggtcttgtttcctttctgtcgcgcagGATGACACCTACACCGAGAGCTATATCAGCACCATCGGCGTGGACTTC
species | Chlamydomonas reinhardtii |
transcript | EDO96600 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: TCATTGGCGACTCCGGTGTTGGCAAGTCTTGCCTGCTCCTTCGTTTCGCG GATGACACCTACACCGAGAGCTATATCAGCACCATCGGCGTGGACTTCEST: gi|49467422|gb|BP095335.1|BP095335
genomic: TCATTGGCGACTCCGGTGTTGGCAAGTCTTGCCTGCTCCTTCGTTTCGCGgtaagtctag ... tgtcgcgcagGATGACACCTACACCGAGAGCTATATCAGCACCATCGGCGTGGACTTC
EST: TCATTGGCGACTCCGGTGTTGGCAAGTCTTGCCTGCTCCTTCGTTTCGCG GATGACACCTACACCGAGAGCTATATCAGCACCATCGGCGTGGACTTCEST: gi|10778347|gb|AV635027.1|AV635027
genomic: TCATTGGCGACTCCGGTGTTGGCAAGTCTTGCCTGCTCCTTCGTTTCGCGgtaagtctag ... tgtcgcgcagGATGACACCTACACCGAGAGCTATATCAGCACCATCGGCGTGGACTTC
EST: TCATTGGCGACTCCGGTGTTGGCAAGTCTTGCCTGCTCCTTCGTTTCGCG GATGACACCTACACCGAGAGCTATATCAGCACCATCGGCGTGGACTTCEST: gi|15694356|gb|BI718661.1|BI718661
genomic: TCATTGGCGACTCCGGTGTTGGCAAGTCTTGCCTGCTCCTTCGTTTCGCGgtaagtctag ... tgtcgcgcagGATGACACCTACACCGAGAGCTATATCAGCACCATCGGCGTGGACTTC
EST: TCATTGGCGACTCCGGTGTTGGCAAGTCTTGCCTGCTCCTTCGTTTCGCG GATGACACCTACACCGAGAGCTATATCAGCACCATCGGCGTGGACTTCEST: gi|161796597|gb|FC082914.1|FC082914
genomic: TCATTGGCGACTCCGGTGTTGGCAAGTCTTGCCTGCTCCTTCGTTTCGCGgtaagtctag ... tgtcgcgcagGATGACACCTACACCGAGAGCTATATCAGCACCATCGGCGTGGACTTC
EST: TCATTGGCGACTCCGGTGTTGGCAAGTCTTGCCTGCTCCTTCGTTTCGCG GATGACACCTACACCGAGAGCTATATCAGCACCATCGGCGTGGACTTCEST: gi|10771327|gb|AV622150.1|AV622150
genomic: TCATTGGCGACTCCGGTGTTGGCAAGTCTTGCCTGCTCCTTCGTTTCGCGgtaagtctag ... tgtcgcgcagGATGACACCTACACCGAGAGCTATATCAGCACCATCGGCGTGGACTTC
EST: TCATTGGCGACTCCGGTGTTGGCAAGTCTTGCCTGCTCCTTCGTTTCGCG GATGACACCTACACCGAGAGCTATATCAGCACCATCGGCGTGGACTTCEST: gi|8933046|gb|BE227807.1|BE227807
genomic: TCATTGGCGACTCCGGTGTTGGCAAGTCTTGCCTGCTCCTTCGTTTCGCGgtaagtctag ... tgtcgcgcagGATGACACCTACACCGAGAGCTATATCAGCACCATCGGCGTGGACTTC
EST: TCATTGGCGACTCCGGTGTTGGCAAGTCTTGCCTGCTCCTTCGTTTCGCG GATGACACCTACACCGAGAGCTATATCAGCACCATCGGCGTGGACTTCEST: gi|10776378|gb|AV633058.1|AV633058
genomic: TCATTGGCGACTCCGGTGTTGGCAAGTCTTGCCTGCTCCTTCGTTTCGCGgtaagtctag ... tgtcgcgcagGATGACACCTACACCGAGAGCTATATCAGCACCATCGGCGTGGACTTC
EST: TCATTGGCGACTCCGGTGTTGGCAAGTCTTGCCTGCTCCTTCGTTTCGCG GATGACACCTACACCGAGAGCTATATCAGCACCATCGGCGTGGACTTCEST: gi|10778045|gb|AV634725.1|AV634725
genomic: TCATTGGCGACTCCGGTGTTGGCAAGTCTTGCCTGCTCCTTCGTTTCGCGgtaagtctag ... tgtcgcgcagGATGACACCTACACCGAGAGCTATATCAGCACCATCGGCGTGGACTTC
EST: TCATTGGCGACTCCGGTGTTGGCAAGTCTTGCCTGCTCCTTCGTTTCGCG GATGACACCTACACCGAGAGCTATATCAGCACCATCGGCGTGGACTTCEST: gi|22063901|gb|BQ815490.1|BQ815490
genomic: TCATTGGCGACTCCGGTGTTGGCAAGTCTTGCCTGCTCCTTCGTTTCGCGgtaagtctag ... tgtcgcgcagGATGACACCTACACCGAGAGCTATATCAGCACCATCGGCGTGGACTTC
EST: TCATTGGCGACTCCGGTGTTGGCAAGTCTTGCCTGCTCCTTCGTTTCGCG GATGACACCTACACCGAGAGCTATATCAGCACCATCGGCGTGGACTTCEST: gi|16432961|gb|BI998187.1|BI998187
genomic: TCATTGGCGACTCCGGTGTTGGCAAGTCTTGCCTGCTCCTTCGTTTCGCGgtaagtctag ... tgtcgcgcagGATGACACCTACACCGAGAGCTATATCAGCACCATCGGCGTGGACTTC
EST: TCATTGGCGACTCCGGTGTTGGCAAGTCTTGCCTGCTCCTTCGTTTCGCG GATGACACCTACACCGAGAGCTATATCAGCACCATCGGCGTGGACTTCEST: gi|6546326|gb|AV392110.1|AV392110
genomic: TCATTGGCGACTCCGGTGTTGGCAAGTCTTGCCTGCTCCTTCGTTTCGCGgtaagtctag ... tgtcgcgcagGATGACACCTACACCGAGAGCTATATCAGCACCATCGGCGTGGACTTC
EST: TCATTGGCGACTCCGGTGTTGGCAAGTCTTGCCTGCTCCTTCGTTTCGCG GATGACACCTACACCGAGAGCTATATCAGCACCATCGGCGTGGACTTCEST: gi|10777853|gb|AV634533.1|AV634533
genomic: TCATTGGCGACTCCGGTGTTGGCAAGTCTTGCCTGCTCCTTCGTTTCGCGgtaagtctag ... tgtcgcgcagGATGACACCTACACCGAGAGCTATATCAGCACCATCGGCGTGGACTTC
EST: GGCAAGTCTTGCCTGCTCCTTCGTTTCGCG GATGACACCTACACCGAGAGCTATATCAGCACCATCGGCGTGGACTTCEST: gi|22073092|gb|BQ822430.1|BQ822430
genomic: GGCAAGTCTTGCCTGCTCCTTCGTTTCGCGgtaagtctag ... tgtcgcgcagGATGACACCTACACCGAGAGCTATATCAGCACCATCGGCGTGGACTTC
EST: TCATTGGCGACTCCGGTGTTGGCAAGTCTTGCCTGCTCCTTCGTTTCGCG GATGACACCTACACCGAGAGCTATATCAGCACCATCGGCGTGGACTTCEST: gi|15697029|gb|BI721334.1|BI721334
genomic: TCATTGGCGACTCCGGTGTTGGCAAGTCTTGCCTGCTCCTTCGTTTCGCGgtaagtctag ... tgtcgcgcagGATGACACCTACACCGAGAGCTATATCAGCACCATCGGCGTGGACTTC
EST: TCATTGGCGACTCCGGTGTTGGCAAGTCTTGCCTGCTCCTTCGTTTCGCG GATGACACCTACACCGAGAGCTATATCAGCACCATCGGCGTGGACTTCEST: gi|16430540|gb|BI995766.1|BI995766
genomic: TCATTGGCGACTCCGGTGTTGGCAAGTCTTGCCTGCTCCTTCGTTTCGCGgtaagtctag ... tgtcgcgcagGATGACACCTACACCGAGAGCTATATCAGCACCATCGGCGTGGACTTC
EST: TCATTGGCGACTCCGGTGTTGGCAAGTCTTGCCTGCTCCTTCGTTTCGCG GATGACACCTACACCGAGAGCTATATCAGCACCATCGGCGTGGACTTC
genomic: TCATTGGCGACTCCGGTGTTGGCAAGTCTTGCCTGCTCCTTCGTTTCGCGgtaagtctag ... tgtcgcgcagGATGACACCTACACCGAGAGCTATATCAGCACCATCGGCGTGGACTTC
catcggcttcattttggaccacttcttaaggtcttgtttcctttctgtcgcgcagGATGACACCTACACCGAGAGCTATATCAGCACCATCGGCGTGGACTTC
tcttgtttcctttctg CT-rich tract
ttcatttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagtctagcatcgcgacatcggcttcattttggaccacttcttaaggtcttgtttcctttctgtcgcgcagGATGACACCTACACCGAGAGCTATATCAGCACCATCGGCGTGGACTTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCT