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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgtggggcgggctggcgggctgacgttggggctcggccttgcttcacgcgcagccctattcgcacaatacctcacacctgcataacctgcaacctcacacggccggcgggcctcaacacacgccacacgccacgccacatgacttatgacgatacccgacatagGAGTGTGATGCGCACATCGCGGCGCACGTGGGCTCGCTGGGCGACTGCCTGGGTCTGGACGCGGTGCCGTACCTGGACCGTGTGGACAGCGTGTGGCAGG

Basic information

species Chlamydomonas reinhardtii
transcript EDO96515
intron # 3
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|10786133|gb|AV642805.1|AV642805
EST:     ATATGTGCATGCATAAGATGGCGGATAAGCTTTACACCCGCCTGCAAAAG                         GAGTGTGATGCGCACATCGCGGCGCACGTGGGCTC
genomic: ATATGTGCATGCATAAGATGGCGGATAAGCTTTACACCCGCCTGCAAAAGgtgtggggcg ... cccgacatagGAGTGTGATGCGCACATCGCGGCGCACGTGGGCTC
EST: gi|10783199|gb|AV639871.1|AV639871
EST:     ATATGTGCATGCATAAGATGGCGGATAAGCTTTACACCCGCCTGCAAAAG                         GAGTGTGATGCGCACATCGCGGCGCAC
genomic: ATATGTGCATGCATAAGATGGCGGATAAGCTTTACACCCGCCTGCAAAAGgtgtggggcg ... cccgacatagGAGTGTGATGCGCACATCGCGGCGCAC