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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagtgtggtggttgtcggtggtggttgtggtgccggacagctagctgctcgcagctagctgcgagcgagtgggaacgtggccacatcaacaacttgtacggcggcccggccgtgtttctgacacgcttgccctgacctctgtccttgcctcgcccctcctccccttggccttccactcgcagCCGGCACCGCGCTGGCGCTGCGCAACGCGGGCGTGCCGTGCGAGCAGGTGTTCAAGATCCAGGAGGGCCGTCCCAACCCCGCCGACCTCATGCGCAACGG

Basic information

species Chlamydomonas reinhardtii
transcript EDO96236
intron # 26
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|15693428|gb|BI717733.1|BI717733
EST:     CGAGATTGCGCGCAACCTGGGCAACCTGNGCTTCGGCCTGGTGGCCACAA                         CCGGCACCGCGCTGGCGCTGCGCAACGCGGGCGTGCCGTGCGAGCAGGTGT
genomic: CGAGATTGCGCGCAACCTGGGCAACCTGGGCTTCGGCCTGGTGGCCACAAgtgagtgtgg ... ccactcgcagCCGGCACCGCGCTGGCGCTGCGCAACGCGGGCGTGCCGTGCGAGCAGGTGT
EST: gi|16072340|gb|BI874336.1|BI874336
EST:     CGAGATTGCGCGCAACCTGGGCAACCTGGGCTTCGGCCTGGTGGCCACAA                         CCGGCACCGCGCTGGCGCTGCGCAACGCGGGCGTGCCGTGCGAGCAGGTGT
genomic: CGAGATTGCGCGCAACCTGGGCAACCTGGGCTTCGGCCTGGTGGCCACAAgtgagtgtgg ... ccactcgcagCCGGCACCGCGCTGGCGCTGCGCAACGCGGGCGTGCCGTGCGAGCAGGTGT
EST: gi|6541372|gb|AV387156.1|AV387156
EST:     CGAGATTGCGCGCAACCTGGGCAACCTGGGCTTCGGCCTGGTGGCCACAA                         CCGGCACCGCGCTGGCGCTGCGCAACGCGGGCGTGCCGTGCGAGCAGGTGT
genomic: CGAGATTGCGCGCAACCTGGGCAACCTGGGCTTCGGCCTGGTGGCCACAAgtgagtgtgg ... ccactcgcagCCGGCACCGCGCTGGCGCTGCGCAACGCGGGCGTGCCGTGCGAGCAGGTGT
EST: gi|22050261|gb|BQ809152.1|BQ809152
EST:     CGAGATTGCGCGCAACCTGGGCAACCTGGGCTTCGGCCTGGTGGCCACAA                         CCGGCACCGCGCTGGCGCTGCGCAACGCGGGCGTGCCGTGCGAGCAGGTGT
genomic: CGAGATTGCGCGCAACCTGGGCAACCTGGGCTTCGGCCTGGTGGCCACAAgtgagtgtgg ... ccactcgcagCCGGCACCGCGCTGGCGCTGCGCAACGCGGGCGTGCCGTGCGAGCAGGTGT
EST: gi|22050262|gb|BQ809153.1|BQ809153
EST:     CGAGATTGCGCGCAACCTGAGCAACCTGGGCTTCGGCCTGGTGGCCACAA                         CCGGCACCGCGCTGGCGCTGCGCAACGCGGGCGTGCCGTGCGAGCAGGTGT
genomic: CGAGATTGCGCGCAACCTGGGCAACCTGGGCTTCGGCCTGGTGGCCACAAgtgagtgtgg ... ccactcgcagCCGGCACCGCGCTGGCGCTGCGCAACGCGGGCGTGCCGTGCGAGCAGGTGT
EST: gi|34987423|gb|CF561340.1|CF561340
EST:     CGAGATTGCGCGCAACCTGGGCAACCTGGGCTTCGGCCTGGTGGCCACAA                         CCGGCACCGCGCTGGCGCTGCGCAACGCGGGCGTGCCGTGCGAGCAGGTGT
genomic: CGAGATTGCGCGCAACCTGGGCAACCTGGGCTTCGGCCTGGTGGCCACAAgtgagtgtgg ... ccactcgcagCCGGCACCGCGCTGGCGCTGCGCAACGCGGGCGTGCCGTGCGAGCAGGTGT
EST: gi|8933132|gb|BE227893.1|BE227893
EST:     CGAGATTGCGCGCAACCTGGGCAACCTGGGCTTCGGCCTGGTGGCCACAA                         CCGGCACCGCGCTGGCGCTGCGCAACGCGGGCGTGCCGTGCGAGCAGGTGT
genomic: CGAGATTGCGCGCAACCTGGGCAACCTGGGCTTCGGCCTGGTGGCCACAAgtgagtgtgg ... ccactcgcagCCGGCACCGCGCTGGCGCTGCGCAACGCGGGCGTGCCGTGCGAGCAGGTGT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgccctgacctctgtccttgcctcgcccctcctccccttggccttccactcgcagCCGGCACCGCGCTGGCGCTGCGCAACGCGGGCGTGCCGTGCGAGCAGGTGTTCAAGATCCAGGAGGGCCGTCCCAACCCCGCCGACCTCATGCGCAACGG
  ccctgac  putative branch site (score: 3)
        cctctgtccttgcctc  CT-rich tract