1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' | 20 5' 3' |
21 5' 3' | 22 5' 3' | 23 5' 3' | 24 5' 3' | 25 5' 3' | 26 5' 3' | 27 5' 3' | 28 5' 3' |
...agtactggggcaaggatattccctgaccgcgagtccgcggcccctacaccgttgctcgttcgcgcacttaccttaccttaaaacttccgcccacacacagGTGATGGGCATTGACAAGGACTTTGCGGCGGCGTTCGCCAAGGCGCAGATCGCCGCGGGCCAGAAGCTGCCCAAGACCGGCAAGGTGTTTGTGTCCATGG
species | Chlamydomonas reinhardtii |
transcript | EDO96236 |
intron # | 25 |
splice site | 3' |
intron type | U2 |
EST: TCCCCGGAGCCGACACGCTGCTGGGACCCGAGATGCGCTCCACCGGAGAG GTGATGGGCATTGACAAGGACTTTGCGGCGGCGTTCGCCAAGGCGCAGATCEST: gi|49465341|gb|BP093254.1|BP093254
genomic: TCCCCGGCGCCGACACGCTGCTGGGCCCCGAGATGCGCTCCACCGGAGAGgtgggcgggg ... ccacacacagGTGATGGGCATTGACAAGGACTTTGCGGCGGCGTTCGCCAAGGCGCAGATC
EST: TCCCCGGCGCCGACACGCTGCTGGGCCCCGAGATGCGCTCCACCGGAGAG GTGATGGGCATTGACAAGGACTTTGCGEST: gi|16072340|gb|BI874336.1|BI874336
genomic: TCCCCGGCGCCGACACGCTGCTGGGCCCCGAGATGCGCTCCACCGGAGAGgtgggcgggg ... ccacacacagGTGATGGGCATTGACAAGGACTTTGCG
EST: TCCCCGGAGCCGACACGCTGCTGGGACCCGAGATGCGCTCCACCGGAGAG GTGATGGGCATTGACAAGGACTTTGCGGCGGCGTTCGCCAAGGCGCAGATCEST: gi|6541372|gb|AV387156.1|AV387156
genomic: TCCCCGGCGCCGACACGCTGCTGGGCCCCGAGATGCGCTCCACCGGAGAGgtgggcgggg ... ccacacacagGTGATGGGCATTGACAAGGACTTTGCGGCGGCGTTCGCCAAGGCGCAGATC
EST: TCCCCGGCGCCGACACGCTGCTGGGCCCCGAGATGCGCTCCACCGGAGAG GTGATGGGCATTGACAAGGACTTTGCGGCGGCGTTCGCCAAGGCGCAGATCEST: gi|22050261|gb|BQ809152.1|BQ809152
genomic: TCCCCGGCGCCGACACGCTGCTGGGCCCCGAGATGCGCTCCACCGGAGAGgtgggcgggg ... ccacacacagGTGATGGGCATTGACAAGGACTTTGCGGCGGCGTTCGCCAAGGCGCAGATC
EST: TCCCCGGAGCCGACACGCTGCTGGGACCCGAGATGCGCTCCACCGGAGAG GTGATGGGCATTGACAAGGACTTTGCGGCGGCGTTCGCCAAGGCGCAGATCEST: gi|22050262|gb|BQ809153.1|BQ809153
genomic: TCCCCGGCGCCGACACGCTGCTGGGCCCCGAGATGCGCTCCACCGGAGAGgtgggcgggg ... ccacacacagGTGATGGGCATTGACAAGGACTTTGCGGCGGCGTTCGCCAAGGCGCAGATC
EST: TCCCCGGAGCCGACACGCTGTTGGGACCCGAGATGCGCTCCACCGGAGAG GTGATGGGCATTGACAAGGACTTTGCGGCGGCGTTCGCCAAGGCGCAGATCEST: gi|34987423|gb|CF561340.1|CF561340
genomic: TCCCCGGCGCCGACACGCTGCTGGGCCCCGAGATGCGCTCCACCGGAGAGgtgggcgggg ... ccacacacagGTGATGGGCATTGACAAGGACTTTGCGGCGGCGTTCGCCAAGGCGCAGATC
EST: CCGAGATGCGCTCCACCGGAGAG GTGATGGGCATTGACAAGGACTTTGCGGCGGCGTTCGCCAAGGCGCAGATCEST: gi|8933132|gb|BE227893.1|BE227893
genomic: CCGAGATGCGCTCCACCGGAGAGgtgggcgggg ... ccacacacagGTGATGGGCATTGACAAGGACTTTGCGGCGGCGTTCGCCAAGGCGCAGATC
EST: TCCCCGGAGCCGACACGCTGCTGGGACCCGAGATGCGCTCCACCGGAGAG GTGATGGGCATTGACAAGGACTTTGCGGCGGCGTTCGCCAAGGCGCAGATCEST: gi|10782506|gb|AV639186.1|AV639186
genomic: TCCCCGGCGCCGACACGCTGCTGGGCCCCGAGATGCGCTCCACCGGAGAGgtgggcgggg ... ccacacacagGTGATGGGCATTGACAAGGACTTTGCGGCGGCGTTCGCCAAGGCGCAGATC
EST: TCCCCGGCGCCGACACGCTGCTGGGCCCCGAGATGCGCTCCACCGGAGAG GTGATGGGCATTGACAAGGACTTTGCGGCGGCGTTCGCCAAGGCGCAGATC
genomic: TCCCCGGCGCCGACACGCTGCTGGGCCCCGAGATGCGCTCCACCGGAGAGgtgggcgggg ... ccacacacagGTGATGGGCATTGACAAGGACTTTGCGGCGGCGTTCGCCAAGGCGCAGATC
acaccgttgctcgttcgcgcacttaccttaccttaaaacttccgcccacacacagGTGATGGGCATTGACAAGGACTTTGCGGCGGCGTTCGCCAAGGCGCAGATCGCCGCGGGCCAGAAGCTGCCCAAGACCGGCAAGGTGTTTGTGTCCATGG
cttccgccc CT-rich tract
ttaaaactt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| agtactggggcaaggatattccctgaccgcgagtccgcggcccctacaccgttgctcgttcgcgcacttaccttaccttaaaacttccgcccacacacagGTGATGGGCATTGACAAGGACTTTGCGGCGGCGTTCGCCAAGGCGCAGATCGCCGCGGGCCAGAAGCTGCCCAAGACCGGCAAGGTGTTTGTGTCCATGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC
- - - - - - - - - - - - - - - - - - - - - - -acaccgt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gcactta