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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagtcgatggggtccctcgccgacgatgacacgcgtgcaagcccacgcgaccactgtacacctctagcagcctgaacatgacatacatcaacattatcaacagATGACGATTACAACCTGCTCGTCGGCCACACGGAGCTGCACCGCAAGCACCACCAGCCCCCGGTGCCCGCGGAGACGGGCGGCCCGCTCGCCAAATACGA

Basic information

species Chlamydomonas reinhardtii
transcript EDP10038
intron # 2
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|10792691|gb|AV630057.1|AV630057
EST:     CAGCTCAGCGGCTGTCCCACTCACCAAGCCGGCCGGGGCTCTCGACCTTG                         ATGACGATTACAACCTGCTCGTCGGCCACACGGAGCTGCACCGCAAGCACC
genomic: CAGCTCAGCGGCTGTCCCACTCACCAAGCCGGCCGGGGCTCTCGACCTTGgtaagtcgat ... ttatcaacagATGACGATTACAACCTGCTCGTCGGCCACACGGAGCTGCACCGCAAGCACC






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gaccactgtacacctctagcagcctgaacatgacatacatcaacattatcaacagATGACGATTACAACCTGCTCGTCGGCCACACGGAGCTGCACCGCAAGCACCACCAGCCCCCGGTGCCCGCGGAGACGGGCGGCCCGCTCGCCAAATACGA
                                         aacattat  TA-rich tract