1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...tccaacagccgtgccatgtttagctcggctgcctcccgcgcgaaacccgcgctaaacccttcaccccttcttcccacacccccttcccttctcaacccagGTCGACATGATCATCGGTGCCGACGGCGCCAACAGCCGCATCGCCAAGGAGATCGACGCCGGCGAGTACGACTACGCCATTGCCTTCCAGGAGCGCATCC
species | Chlamydomonas reinhardtii |
transcript | EDP09986 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: ACAACAGCTACGAGGATGGCAGCAAGATGGGCATGCCCGTCACCCTGGAG GTCGACATGATCATCGGTTGC-GACGGTGCCA-CAGCCGCATCGCCA-GGAEST: gi|8513595|gb|BE121490.1|BE121490
genomic: ACAACAGCTACGAGGATGGCAGCAAGATGGGCAAGCCCGCCACCCTGGAGgtgggtggct ... ctcaacccagGTCGACATGATCATCGGT-GCCGACGGCGCCAACAGCCGCATCGCCAAGGA
EST: ACAACAGCTACTAGGATGGCAGCAAGATGGGCAAGCCCGCCACCCTGGAG GTCGACATGATCATCGGTGCCGACGGCGCCAACAGCCGCATCGCCAAGGAGEST: gi|10191368|gb|BE761444.1|BE761444
genomic: ACAACAGCTACGAGGATGGCAGCAAGATGGGCAAGCCCGCCACCCTGGAGgtgggtggct ... ctcaacccagGTCGACATGATCATCGGTGCCGACGGCGCCAACAGCCGCATCGCCAAGGAG
EST: ACAACAGCTACGAGGATGGCAGCAAGATGGGCAAGCCCGCCACCCTGGAG GTCGACATGATCATCGGTGCCGACGGCGCCAACAGCCGCATCGCCAAGGAGEST: gi|7687132|gb|AW757780.1|AW757780
genomic: ACAACAGCTACGAGGATGGCAGCAAGATGGGCAAGCCCGCCACCCTGGAGgtgggtggct ... ctcaacccagGTCGACATGATCATCGGTGCCGACGGCGCCAACAGCCGCATCGCCAAGGAG
EST: ACAACAGCTACGAGGATGGCAGCAAGATGGGCAAGCCCGCCACCCTGGAG GTCGACATGATCATCGGTGCCGACGGCGCCAACAGCCGCATCGCCAAGGAGEST: gi|23363853|gb|BU651673.1|BU651673
genomic: ACAACAGCTACGAGGATGGCAGCAAGATGGGCAAGCCCGCCACCCTGGAGgtgggtggct ... ctcaacccagGTCGACATGATCATCGGTGCCGACGGCGCCAACAGCCGCATCGCCAAGGAG
EST: ACAACAGCTACGAGGATGGCAGCAAGATGGGCAAGCCCGCCACCCTGGAG GTCGACATGATCATCGGTGCCGACGGCGCCAACAGCCGCATCGCCAAGGAGEST: gi|10772753|gb|AV623576.1|AV623576
genomic: ACAACAGCTACGAGGATGGCAGCAAGATGGGCAAGCCCGCCACCCTGGAGgtgggtggct ... ctcaacccagGTCGACATGATCATCGGTGCCGACGGCGCCAACAGCCGCATCGCCAAGGAG
EST: ACAACAGCTACGAGGATGGCAGCAAGATGGGCAAGCCCGCCACCCTGGAG GTCGACATGATCATCGGTGCCGACGGCGCCAACAGCCGCATCGCCAAGGAG
genomic: ACAACAGCTACGAGGATGGCAGCAAGATGGGCAAGCCCGCCACCCTGGAGgtgggtggct ... ctcaacccagGTCGACATGATCATCGGTGCCGACGGCGCCAACAGCCGCATCGCCAAGGAG
cccgcgctaaacccttcaccccttcttcccacacccccttcccttctcaacccagGTCGACATGATCATCGGTGCCGACGGCGCCAACAGCCGCATCGCCAAGGAGATCGACGCCGGCGAGTACGACTACGCCATTGCCTTCCAGGAGCGCATCC
cgctaaa putative branch site (score: 3)
cccttcaccccttctt CT-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tccaacagccgtgccatgtttagctcggctgcctcccgcgcgaaacccgcgctaaacccttcaccccttcttcccacacccccttcccttctcaacccagGTCGACATGATCATCGGTGCCGACGGCGCCAACAGCCGCATCGCCAAGGAGATCGACGCCGGCGAGTACGACTACGCCATTGCCTTCCAGGAGCGCATCC
tccaaca
- - - - - - - -atgttta
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