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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaggtctaggtggcgcttgtgcccttgcccccggattacggccgtcgctcgcagcatcgtcttcgacttcataacgcgtgctgggcgccgtttgggtcggcgcggctcgactaacgcgcgtccgttgctgtcgatgcagGCCCTTATGAGGGGGGACTCTGGAGGATACACGTCGAGCTGCCGGAAGCCTATCCCTACAAGTCGCCTTCCATCGGATTCGTGAACCGGTGCTACCACCC

Basic information

species Chlamydomonas reinhardtii
transcript EDP09753
intron # 2
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|23365360|gb|BU653180.1|BU653180
EST:     GACAACATCAGCGAGTTCAACGTCGACTTCGCCGGCCCCAAAGACA                         GCCCTTATGAGGGGGGACTCTGGAGGATACACGTCGAGCTGCCGGAAGCCT
genomic: GACAACATCAGCGAGTTCAACGTCGACTTCGCCGGCCCCAAAGACAgtaggtctag ... gtcgatgcagGCCCTTATGAGGGGGGACTCTGGAGGATACACGTCGAGCTGCCGGAAGCCT
EST: gi|22071044|gb|BQ820382.1|BQ820382
EST:     GGAAGACAACATCAGCGAGTTCAACGTCGACTTCGCCGGCCCCAAAGACA                         GCCCTTATGAGGGGGGACTCTGGAGGATACACGTCGAGCTGCCGGAAGCCT
genomic: GGAAGACAACATCAGCGAGTTCAACGTCGACTTCGCCGGCCCCAAAGACAgtaggtctag ... gtcgatgcagGCCCTTATGAGGGGGGACTCTGGAGGATACACGTCGAGCTGCCGGAAGCCT
EST: gi|10788266|gb|AV644938.1|AV644938
EST:     GGAAGACAACATCAGCGAGTTCAACGTCGACTTCGCCGGCCCCAAAGACA                         GCCCTTATGAGGGGGGACTCTGGAGGATACACGTCGAGCTGCCGGAAGCCT
genomic: GGAAGACAACATCAGCGAGTTCAACGTCGACTTCGCCGGCCCCAAAGACAgtaggtctag ... gtcgatgcagGCCCTTATGAGGGGGGACTCTGGAGGATACACGTCGAGCTGCCGGAAGCCT
EST: gi|8400882|gb|BE056516.1|BE056516
EST:     GGAAGACAACATCAGCGAGTTCAACGTCGACTTCGCCGGCCCCAAAGACA                         GCCCTTATGAGGGGGGACTCTGGAGGATACACGTCGAGCTGCCGGAAGCCT
genomic: GGAAGACAACATCAGCGAGTTCAACGTCGACTTCGCCGGCCCCAAAGACAgtaggtctag ... gtcgatgcagGCCCTTATGAGGGGGGACTCTGGAGGATACACGTCGAGCTGCCGGAAGCCT
EST: gi|49466669|gb|BP094582.1|BP094582
EST:     GGAAGACAACATCAGCGAGTTCAACGTCGACTTCGCCGGCCCCAAAGACA                         GCCCTTATGAGGGGGGACTCTGGAGGATACACGTCGAGCTGCCGGAAGCCT
genomic: GGAAGACAACATCAGCGAGTTCAACGTCGACTTCGCCGGCCCCAAAGACAgtaggtctag ... gtcgatgcagGCCCTTATGAGGGGGGACTCTGGAGGATACACGTCGAGCTGCCGGAAGCCT
EST: gi|16071742|gb|BI873738.1|BI873738
EST:     GGAAGACAACATCAGCGAGTTCAACGTCGACTTCGCCGGCCCCAAAGACA                         GCCCTTATGAGGGGGGACTCTGGAGGATACACGTCGAGCTGCCGGAAGCCT
genomic: GGAAGACAACATCAGCGAGTTCAACGTCGACTTCGCCGGCCCCAAAGACAgtaggtctag ... gtcgatgcagGCCCTTATGAGGGGGGACTCTGGAGGATACACGTCGAGCTGCCGGAAGCCT
EST: gi|15699843|gb|BI724148.1|BI724148
EST:     GGAAGACAANNTCAGCGAGTTCAACGTCGACTTCGCCGGCCCCAAAGACA                         GCCCTTATGAGGGGGGACTCTGGAGGATACACGTCGAGCTGCCGGAAGCCT
genomic: GGAAGACAACATCAGCGAGTTCAACGTCGACTTCGCCGGCCCCAAAGACAgtaggtctag ... gtcgatgcagGCCCTTATGAGGGGGGACTCTGGAGGATACACGTCGAGCTGCCGGAAGCCT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gcgccgtttgggtcggcgcggctcgactaacgcgcgtccgttgctgtcgatgcagGCCCTTATGAGGGGGGACTCTGGAGGATACACGTCGAGCTGCCGGAAGCCTATCCCTACAAGTCGCCTTCCATCGGATTCGTGAACCGGTGCTACCACCC
                        gactaac  putative branch site (score: 1)