1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
gtgagccggggttcatgcacccgtgactagtaccccaggcggccaggccccgcactatccgcccaagcataccaggccttgcacggtgcgcgggctcggctctctctctctcccctgttgccctgtgtttctcatccgtgttccccactttccatctcacagGATGTGCAACTTTCGGAGGATTGCTGCCTGACCATGTTCTCGCTCAAGCAGGTCAACGTGGAGACAG
species | Chlamydomonas reinhardtii |
transcript | EDP09734 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: GCTTCCACATCGCCCACAACACCAAGGCGGTGCCCCTAGAGAAGATCCAG GATGTGCAACTTTCGGAGGATTGCTGCCTGACCATGTTCTCGCTEST: gi|15370392|gb|BI529818.1|BI529818
genomic: GCTTCCACATCGCCCACAACACCAAGGCGGTGCCCCTAGAGAAGATCCAGgtgagccggg ... catctcacagGATGTGCAACTTTCGGAGGATTGCTGCCTGACCATGTTCTCGCT
EST: GCTTCCACATCGCCCACAACACCAAGGCGGTGCCCCTAGAGAAGATCCAG GATGTGCAACTTTCGGAGGATTGCTGCCTGACCATGTTCTCGCTCAAGCAGEST: gi|9027815|gb|BE237855.1|BE237855
genomic: GCTTCCACATCGCCCACAACACCAAGGCGGTGCCCCTAGAGAAGATCCAGgtgagccggg ... catctcacagGATGTGCAACTTTCGGAGGATTGCTGCCTGACCATGTTCTCGCTCAAGCAG
EST: GCTTCCACATCGCCCACAACACCAAGGCGGTGCCCCTAGAGAAGATCCAG GATGTGCAACTTTCGGAGGATTGCTGCCTGACCATGTTCTCGCTCAAGCAGEST: gi|22063169|gb|BQ815100.1|BQ815100
genomic: GCTTCCACATCGCCCACAACACCAAGGCGGTGCCCCTAGAGAAGATCCAGgtgagccggg ... catctcacagGATGTGCAACTTTCGGAGGATTGCTGCCTGACCATGTTCTCGCTCAAGCAG
EST: GCTTCCACATCGCCCACAACACCAAGGCGGTGCCCCTAGAGAAGATCCAG GATGTGCAACTTTCGGAGGATTGCTGCCTGACCATGTTCTCGCTCAAGCAGEST: gi|8287304|gb|BE024863.1|BE024863
genomic: GCTTCCACATCGCCCACAACACCAAGGCGGTGCCCCTAGAGAAGATCCAGgtgagccggg ... catctcacagGATGTGCAACTTTCGGAGGATTGCTGCCTGACCATGTTCTCGCTCAAGCAG
EST: GCTTCCACATCGCCCACAACACCAAGGCGGTGCCCCTAGAGAAGATCCAG GATGTGCAACTTTCGGAGGATTGCTGCCTGACCATGTTCTCGCTCAAGCAG
genomic: GCTTCCACATCGCCCACAACACCAAGGCGGTGCCCCTAGAGAAGATCCAGgtgagccggg ... catctcacagGATGTGCAACTTTCGGAGGATTGCTGCCTGACCATGTTCTCGCTCAAGCAG
ctctcccctgttgccctgtgtttctcatccgtgttccccactttccatctcacagGATGTGCAACTTTCGGAGGATTGCTGCCTGACCATGTTCTCGCTCAAGCAGGTCAACGTGGAGACAG
ttccccactttccatc CT-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgagccggggttcatgcacccgtgactagtaccccaggcggccaggccccgcactatccgcccaagcataccaggccttgcacggtgcgcgggctcggctctctctctctcccctgttgccctgtgtttctcatccgtgttccccactttccatctcacagGATGTGCAACTTTCGGAGGATTGCTGCCTGACCATGTTCTCGCTCAAGCAGGTCAACGTGGAGACAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA