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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagccggggttcatgcacccgtgactagtaccccaggcggccaggccccgcactatccgcccaagcataccaggccttgcacggtgcgcgggctcggctctctctctctcccctgttgccctgtgtttctcatccgtgttccccactttccatctcacagGATGTGCAACTTTCGGAGGATTGCTGCCTGACCATGTTCTCGCTCAAGCAGGTCAACGTGGAGACAG

Basic information

species Chlamydomonas reinhardtii
transcript EDP09734
intron # 2
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|8932818|gb|BE227579.1|BE227579
EST:     GCTTCCACATCGCCCACAACACCAAGGCGGTGCCCCTAGAGAAGATCCAG                         GATGTGCAACTTTCGGAGGATTGCTGCCTGACCATGTTCTCGCT
genomic: GCTTCCACATCGCCCACAACACCAAGGCGGTGCCCCTAGAGAAGATCCAGgtgagccggg ... catctcacagGATGTGCAACTTTCGGAGGATTGCTGCCTGACCATGTTCTCGCT
EST: gi|15370392|gb|BI529818.1|BI529818
EST:     GCTTCCACATCGCCCACAACACCAAGGCGGTGCCCCTAGAGAAGATCCAG                         GATGTGCAACTTTCGGAGGATTGCTGCCTGACCATGTTCTCGCTCAAGCAG
genomic: GCTTCCACATCGCCCACAACACCAAGGCGGTGCCCCTAGAGAAGATCCAGgtgagccggg ... catctcacagGATGTGCAACTTTCGGAGGATTGCTGCCTGACCATGTTCTCGCTCAAGCAG
EST: gi|9027815|gb|BE237855.1|BE237855
EST:     GCTTCCACATCGCCCACAACACCAAGGCGGTGCCCCTAGAGAAGATCCAG                         GATGTGCAACTTTCGGAGGATTGCTGCCTGACCATGTTCTCGCTCAAGCAG
genomic: GCTTCCACATCGCCCACAACACCAAGGCGGTGCCCCTAGAGAAGATCCAGgtgagccggg ... catctcacagGATGTGCAACTTTCGGAGGATTGCTGCCTGACCATGTTCTCGCTCAAGCAG
EST: gi|22063169|gb|BQ815100.1|BQ815100
EST:     GCTTCCACATCGCCCACAACACCAAGGCGGTGCCCCTAGAGAAGATCCAG                         GATGTGCAACTTTCGGAGGATTGCTGCCTGACCATGTTCTCGCTCAAGCAG
genomic: GCTTCCACATCGCCCACAACACCAAGGCGGTGCCCCTAGAGAAGATCCAGgtgagccggg ... catctcacagGATGTGCAACTTTCGGAGGATTGCTGCCTGACCATGTTCTCGCTCAAGCAG
EST: gi|8287304|gb|BE024863.1|BE024863
EST:     GCTTCCACATCGCCCACAACACCAAGGCGGTGCCCCTAGAGAAGATCCAG                         GATGTGCAACTTTCGGAGGATTGCTGCCTGACCATGTTCTCGCTCAAGCAG
genomic: GCTTCCACATCGCCCACAACACCAAGGCGGTGCCCCTAGAGAAGATCCAGgtgagccggg ... catctcacagGATGTGCAACTTTCGGAGGATTGCTGCCTGACCATGTTCTCGCTCAAGCAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ctctcccctgttgccctgtgtttctcatccgtgttccccactttccatctcacagGATGTGCAACTTTCGGAGGATTGCTGCCTGACCATGTTCTCGCTCAAGCAGGTCAACGTGGAGACAG
                                 ttccccactttccatc  CT-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtgagccggggttcatgcacccgtgactagtaccccaggcggccaggccccgcactatccgcccaagcataccaggccttgcacggtgcgcgggctcggctctctctctctcccctgttgccctgtgtttctcatccgtgttccccactttccatctcacagGATGTGCAACTTTCGGAGGATTGCTGCCTGACCATGTTCTCGCTCAAGCAGGTCAACGTGGAGACAG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA