1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...ggatgcaccgcaagcgccaaggcgccgcgaggtttgccaaggcgtgcatgcaagctgtaagtgaacctgacggagtgacggggtcgtccgcaccctgcagACTACAAGGCGGAGCGGGAGGAGGCGCCGGTGCCGGGCGACGTGTGGCGGGCGGATATGCCCAGCGAGGAGGAGATGCCGCCGGTGCTGAGCTGTAAAGA
species | Chlamydomonas reinhardtii |
transcript | EDP09723 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: CGACGTGAAGGAGGGCGCGCTGCACGGCAGCTACAGCTGGGCGCTACAGG ACTACAAGGCGGAGCGGGAGGAGGCGCCGGTGCCGGGCGACGTGTGGCGGGEST: gi|16437748|gb|BM002968.1|BM002968
genomic: CGACGTGAAGGAGGGCGCGCTGCACGGCAGCTACAGCTGGGCGCTACAGGgtgcgtggct ... caccctgcagACTACAAGGCGGAGCGGGAGGAGGCGCCGGTGCCGGGCGACGTGTGGCGGG
EST: CGACGTGAAGGAGGGCGCGCTGCACGGCAGCTACAGCTGGGCGCTACAGG ACTACAAGGCGGAGCGGGAGGAGGCGCCGGTGCCGGGCGACGTGTGGCGGG
genomic: CGACGTGAAGGAGGGCGCGCTGCACGGCAGCTACAGCTGGGCGCTACAGGgtgcgtggct ... caccctgcagACTACAAGGCGGAGCGGGAGGAGGCGCCGGTGCCGGGCGACGTGTGGCGGG
gcatgcaagctgtaagtgaacctgacggagtgacggggtcgtccgcaccctgcagACTACAAGGCGGAGCGGGAGGAGGCGCCGGTGCCGGGCGACGTGTGGCGGGCGGATATGCCCAGCGAGGAGGAGATGCCGCCGGTGCTGAGCTGTAAAGA
acctgac putative branch site (score: 3)
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ggatgcaccgcaagcgccaaggcgccgcgaggtttgccaaggcgtgcatgcaagctgtaagtgaacctgacggagtgacggggtcgtccgcaccctgcagACTACAAGGCGGAGCGGGAGGAGGCGCCGGTGCCGGGCGACGTGTGGCGGGCGGATATGCCCAGCGAGGAGGAGATGCCGCCGGTGCTGAGCTGTAAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG
- atgcacc
- - - - - - - - - - - - - - -aggtttg
- - - - - - - - - - - - - - - - - - - - - - -gcatgca
- - - - - - - - - - - - - - - - - - - - - - - - - - - -tgtaagt