1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
gttcgtgacatgcgggctgtatgctttcacgcgtacaacgtcgtgcttacaaccaaccatcatgatgcaagtgagccttttgtgttctcacctcggcaaacctggcaaacctcaaagttcgactgcccctcgggcagGCCATCCGCGACCGTGTTGAGGTTATGCTGGACACCGCCGGTAGGGCGGGTGTCAAGGTGGTGTGTCTCCAAGAGGCATG
species | Chlamydomonas reinhardtii |
transcript | EDP09706 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: AGAACAAAATTGTGCTGCCCACGACCGCGCCCTTCGCCGCGCAAGCCCAG GCCATCCGCGACCGTGTTGAGGTTATGCTGGACACCGCCGGTAGGGCGGGTEST: gi|16071500|gb|BI873496.1|BI873496
genomic: AGAACAAAATTGTGCTGCCCACGACCGCGCCCTTCGCCGCGCAAGCCCAGgttcgtgaca ... cctcgggcagGCCATCCGCGACCGTGTTGAGGTTATGCTGGACACCGCCGGTAGGGCGGGT
EST: AGAACAAAATTGTGCTGCCCACGACCGCGCCCTTCGCCGCGCAAGCCCAG GCCATCCGCGACCGTGTTGAGGTTATGCTGGACACCGCCGGTAGGGCGGGTEST: gi|22070532|gb|BQ819865.1|BQ819865
genomic: AGAACAAAATTGTGCTGCCCACGACCGCGCCCTTCGCCGCGCAAGCCCAGgttcgtgaca ... cctcgggcagGCCATCCGCGACCGTGTTGAGGTTATGCTGGACACCGCCGGTAGGGCGGGT
EST: AGAACAAAATTGTGCTGCCCACGACCGCGCCCTTCGCCGCGCAAGCCCAG GCCATCCGCGACCGTGTTGAGGTTATGCTGGACACCGCCGGTAGGGCGGGTEST: gi|49468513|gb|BP096374.1|BP096374
genomic: AGAACAAAATTGTGCTGCCCACGACCGCGCCCTTCGCCGCGCAAGCCCAGgttcgtgaca ... cctcgggcagGCCATCCGCGACCGTGTTGAGGTTATGCTGGACACCGCCGGTAGGGCGGGT
EST: AGAACAAAATGGTGCTGCCCACGACCGCGCCCTTCGCCGCGCAAGCCCAG GCCATCCGCGACCGTGTNGAGGTTATGCTGGACACCGCCGGTAGGGCGGGTEST: gi|22070531|gb|BQ819864.1|BQ819864
genomic: AGAACAAAATTGTGCTGCCCACGACCGCGCCCTTCGCCGCGCAAGCCCAGgttcgtgaca ... cctcgggcagGCCATCCGCGACCGTGTTGAGGTTATGCTGGACACCGCCGGTAGGGCGGGT
EST: AGAACAAAATTGTGCTGCCCACGACCGCGCCCTTCGCCGCGCAAGCCCAG GCCATCCGCGACCGTGTTGAGGTTATGCTGGACACCGCCGGTAGGGCGGGTEST: gi|22076771|gb|BQ825547.1|BQ825547
genomic: AGAACAAAATTGTGCTGCCCACGACCGCGCCCTTCGCCGCGCAAGCCCAGgttcgtgaca ... cctcgggcagGCCATCCGCGACCGTGTTGAGGTTATGCTGGACACCGCCGGTAGGGCGGGT
EST: AGAACAAAATTGTGCTGCCCACGACCGCGCCCTTCGCCGCGCAAGCCCAG GCCATCCGCGACCGTGTTGAGGTTATGCTGGACACCGCCGGTAGGGCGGGT
genomic: AGAACAAAATTGTGCTGCCCACGACCGCGCCCTTCGCCGCGCAAGCCCAGgttcgtgaca ... cctcgggcagGCCATCCGCGACCGTGTTGAGGTTATGCTGGACACCGCCGGTAGGGCGGGT
tgttctcacctcggcaaacctggcaaacctcaaagttcgactgcccctcgggcagGCCATCCGCGACCGTGTTGAGGTTATGCTGGACACCGCCGGTAGGGCGGGTGTCAAGGTGGTGTGTCTCCAAGAGGCATG
ttctcac putative branch site (score: 2)
ctgcccctc putative PPT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttcgtgacatgcgggctgtatgctttcacgcgtacaacgtcgtgcttacaaccaaccatcatgatgcaagtgagccttttgtgttctcacctcggcaaacctggcaaacctcaaagttcgactgcccctcgggcagGCCATCCGCGACCGTGTTGAGGTTATGCTGGACACCGCCGGTAGGGCGGGTGTCAAGGTGGTGTGTCTCCAAGAGGCATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG