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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgggcatggctcggcttttgcttgcggacttgggttcttgggtcgcacagcccagcactcgctgggtcttcggcgggcttctgctacgtgtgtgatcagttgataaataagatagttgggttgccaggtcaacgttcaccgatcctactctcttgcatcgcgctcgcagGCTGCCCGCGCCGTCGTCGACGTGCGCGCGGAGAAGAAGATCCGCGTGGCCATCAACGGCTTCGGTCGCATTGGCCGCAACTTCCTGCGCTGCTGGCACG

Basic information

species Chlamydomonas reinhardtii
transcript EDP09609
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: EDP09609 (Chlamydomonas reinhardtii), 3'ss of exon 2
lower sequence: LOC_Os03g03720.1 (Oryza sativa), 3'ss of exon 2
gtgggcatggctcggcttttgcttgcggacttgggttcttgggtcgcacagcccagcactcgctgggtcttcggcgggcttctgctacgtgtgtgatcagttgataaataagatagttgggttgccaggtcaacgttcaccgatcctactctcttgcatcgcgctcgcagGCTGCCCGCGC---CGTCGTCGACGTGCGCGCGGAGAAGAAGATCCGCGTGGCCATCAACGGCTTCGGTCGCATTGGCCGCAACTTCCTGCGCTGCTGGCACG
                                                               | | | || |  |     |         | | ||   |||   |      || |  |  ||  ||  ||| || |   ||    | | |    | |     | ||||||| || | |    || |||    | ||  || |||  |||| ||   || ||||||||||||||||| |||||||||||||||||||| || |||||||   
---------------------------------------------------------------tcgtttttggatgcctcgccaaccacaatatcatgtattgtacagacgtgtattctgactgtaagcgcaa-gtcc--tgaatgaattgttcaacctg----tggcagGCTACCGGAGAGAACGCCGTGAGGGCGCCGGCTGAGGCGAAGCTCAAGGTTGCCATCAACGGCTTCGGCCGCATTGGCCGCAACTTCCTCCGGTGCTGGC---

upper sequence: EDP09609 (Chlamydomonas reinhardtii), 3'ss of exon 2
lower sequence: LOC_Os04g38600.2 (Oryza sativa), 3'ss of exon 2
gtgggcatggctcggcttttgcttgcggacttgggttcttgggtcgcacagcccagcactcgctgggtcttcggcgggcttctgctacgtgtgtgatcagttgataaataagatagttgggttgcc-aggtcaacgtt-caccgatcctactctcttgcatcgcgctcgcagGCTGCCCGCGCCGTCGTCGACGTGCGCGCGGAGAAGAAGATCCGCGTGGCCATCAACGGCTTCGGTCGCATTGGCCGCAACTTCCTGCGCTGCTGGCACG
                                                    |  ||           |  |||    ||| || | |||    |   ||  |     |  |  |   ||| ||   | ||    ||| |  ||  |  |       |  | || |  || ||| |  |||| ||        | ||   |||||  |||| |    ||||| |||||||| ||||| ||||| || |||||||||||||| ||||      
-------------------------------------------------gtacgtgcgtgaagcaatgcaccggaaaacttttgttgcgt---cgtcgaggcggcgtgtgcgtgacgcggggtgttgaagtttgtgttgcggcgggcgca-------gGTTGGCACGAGC-GGCGGGGCGCGGCGG-------GCGCCGACGGAGGCGAAGCTGAAGGTGGCGATCAACGGGTTCGGCCGCATCGGGCGCAACTTCCTGCGGTGCT------

upper sequence: EDP09609 (Chlamydomonas reinhardtii), 3'ss of exon 2
lower sequence: GRMZM2G162845_T01 (Zea mays), 3'ss of exon 2
--gtgggcatggctcggcttttgcttgcggacttgggttcttgggtcgcacagcccagcactcgctgggtcttcggcgggcttctgctacgtgtgtgatcagttgataaataagatagttgggttgccag-gtcaacgttcaccgatcctactctcttgca-tcgcgc-tcg--cagGCTG---CCCGCGCCGTC--GTCGACGTGCGCGC----GGAGAAGAAGATCCGCGTGGCCATCAACGGCTTCGGTCGCATTGGCCGCAACTTCCTGCGCTGCTGGCACG
    | || || ||   |    ||  || ||    | | | || |  |    |||      | ||   |   |  ||  |   |  | |||   |  ||   |||   | | | ||   || |  ||    | |   |    ||   |   |   ||||   | | || |||  |||   |   || ||| || |  || || | | ||||     |||   ||| ||   |||||||||||||| ||||||||||| || || ||||||||||| |         
gtacgtgcctgcctgcccccgggccggccgatc--gatccgtgcgcggtcgtgccgcatcgtagcgtaggaatgtgctagtagcaac-acgatcg-aatggcttggggattcacatgtctgcgccgctgctgcccctggctgcctgactcgcctgcttgtgcttgtgcatcgatcagATCGGCACCAGCGGCGGCAGGTTGAGGCGGGCGCCGACAGAGGCAAAGCTCAAGGTGGCCATCAACGGGTTCGGTCGCATCGGGCGTAACTTCCTGCGGT---------

upper sequence: EDP09609 (Chlamydomonas reinhardtii), 3'ss of exon 2
lower sequence: GRMZM5G845611_T01 (Zea mays), 3'ss of exon 1
gtgggcatggctcggcttttgcttgcggacttgggttcttgggtcgcacagcccagcactcgctgggtcttcggcgggcttctgctacgtgtgtgatcagttgataaataagatagttgggttgccaggtcaacgttcaccgatcctactctcttgcatcgcgctcgcagGCTGCCCGCGCCGTCGTCGACGTGCGCGCGGAGAAGAAGATCCGCGTGGCCATCAACGGCTTCGGTCGCATTGGCCGCAACTTCCTGCGCTGCTGGCACG
                                                 |     | |||||     | |||     ||   || || |    | | |  | ||  | || |   | |   || || | |    | | |||           | ||   |  ||   | ||  |  |||     |||    | || ||| |||  |||| |    ||||| |||||||||||||| ||||| ||||| |||||||| || |||||||   
-------------------------------------------------aaatgcgtactcgtatatttttcacactgcagttgttatgcagttaagc--tcgaatagtatgcatgcttaattccctgcttgctggtgacc-----------cctgtgacagGCCACCGGGGAGAACGC-----CGTGAGGGCGCCCGCAGAGGCGAAGCTGAAGGTGGCGATCAACGGCTTCGGCCGCATCGGCCGGAACTTCCTCCGGTGCTGGC---

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|10782260|gb|AV638940.1|AV638940
EST:     GGCGTCCGCGCCAAG                         GCTGCCCGCGCCGTCGTCGACGTGCGCGCGGAGAAGAAGATCCGCGTGGCC
genomic: GGCGTCCGCGCCAAGgtgggcatgg ... gcgctcgcagGCTGCCCGCGCCGTCGTCGACGTGCGCGCGGAGAAGAAGATCCGCGTGGCC
EST: gi|22070074|gb|BQ819509.1|BQ819509
EST:     GCGCCTTCACCGGCAGCGCCGTGTCCTCCAAGTCTGGCGTCCGCGCCAAG                         GCTGCCCGCGCCGTCGTCGACGTGCGCGCGGAGAAGAAGATCCGCGTGGCC
genomic: GCGCCTTCACCGGCAGCGCCGTGTCCTCCAAGTCTGGCGTCCGCGCCAAGgtgggcatgg ... gcgctcgcagGCTGCCCGCGCCGTCGTCGACGTGCGCGCGGAGAAGAAGATCCGCGTGGCC
EST: gi|10778096|gb|AV634776.1|AV634776
EST:     GCGCCTTCACCGGCAGCGCCGTGTCCTCCAAGTCTGGCGTCCGCGCCAAG                         GCTGCCCGCGCCGTCGTCGACGTGCGCGCGGAGAAGAAGATCCGCGTGGCC
genomic: GCGCCTTCACCGGCAGCGCCGTGTCCTCCAAGTCTGGCGTCCGCGCCAAGgtgggcatgg ... gcgctcgcagGCTGCCCGCGCCGTCGTCGACGTGCGCGCGGAGAAGAAGATCCGCGTGGCC
EST: gi|10787238|gb|AV643910.1|AV643910
EST:     GCGCCTTCACCGGCAGCGCCGTGTCCTCCAAGTCTGGCGTCCGCGCCAAG                         GCTGCCCGCGCCGTCGTCGACGTGCGCGCGGAGAAGAAGATCCGCGTGGCC
genomic: GCGCCTTCACCGGCAGCGCCGTGTCCTCCAAGTCTGGCGTCCGCGCCAAGgtgggcatgg ... gcgctcgcagGCTGCCCGCGCCGTCGTCGACGTGCGCGCGGAGAAGAAGATCCGCGTGGCC
EST: gi|161808102|gb|FC099215.1|FC099215
EST:     GCGCCTTCACCGGCAGCGCCGTGTCCTCCAAGTCTGGCGTCCGCGCCAAG                         GCTGCCCGCGCCGTCGTCGACGTGCGCGCGGAGAAGAAGATCCGCGTGGCC
genomic: GCGCCTTCACCGGCAGCGCCGTGTCCTCCAAGTCTGGCGTCCGCGCCAAGgtgggcatgg ... gcgctcgcagGCTGCCCGCGCCGTCGTCGACGTGCGCGCGGAGAAGAAGATCCGCGTGGCC
EST: gi|10784414|gb|AV641086.1|AV641086
EST:     GCGCCTTCACCGGCAGCGCCGTGTCCTCCAAGTCTGGCGTCCGCGCCAAG                         GCTGCCCGCGCCGTCGTCGACGTGCGCGCGGAGAAGAAGATCCGCGTGGCC
genomic: GCGCCTTCACCGGCAGCGCCGTGTCCTCCAAGTCTGGCGTCCGCGCCAAGgtgggcatgg ... gcgctcgcagGCTGCCCGCGCCGTCGTCGACGTGCGCGCGGAGAAGAAGATCCGCGTGGCC
EST: gi|239841890|gb|GR283747.1|GR283747
EST:     GCGCCTTCACCGGCAGCGCCGTGTCCTCCAAGTCTGGCGTCCGCGCCAAG                         GCTGCCCGCGCCGTCGTCGACGTGCGCGCGGAGAAGAAGATCCGCGTGGCC
genomic: GCGCCTTCACCGGCAGCGCCGTGTCCTCCAAGTCTGGCGTCCGCGCCAAGgtgggcatgg ... gcgctcgcagGCTGCCCGCGCCGTCGTCGACGTGCGCGCGGAGAAGAAGATCCGCGTGGCC
EST: gi|34993726|gb|CF567643.1|CF567643
EST:     GCGCCTTCACCGGCAGCGCCGTGTCCTCCAAGTCTGGCGTCCGCGCCAAG                         GCTGCCCGCGCCGTCGTCGACGTGCGCGCGGAGAAGAAGATCCGCGTGGCC
genomic: GCGCCTTCACCGGCAGCGCCGTGTCCTCCAAGTCTGGCGTCCGCGCCAAGgtgggcatgg ... gcgctcgcagGCTGCCCGCGCCGTCGTCGACGTGCGCGCGGAGAAGAAGATCCGCGTGGCC
EST: gi|161815697|gb|FC101838.1|FC101838
EST:     GCGCCTTCACCGGCAGCGCCGTGTCCTCCAAGTCTGGCGTCCGCGCCAAG                         GCTGCCCGCGCCGTCGTCGACGTGCGCGCGGAGAAGAAGATCCGCGTGGCC
genomic: GCGCCTTCACCGGCAGCGCCGTGTCCTCCAAGTCTGGCGTCCGCGCCAAGgtgggcatgg ... gcgctcgcagGCTGCCCGCGCCGTCGTCGACGTGCGCGCGGAGAAGAAGATCCGCGTGGCC
EST: gi|49463053|gb|BP090966.1|BP090966
EST:     GCGCCTTCACCGGCAGCGCCGTGTCCTCCAAGTCTGGCGTCCGCGCCAAG                         GCTGCCCGCGTCCGTCGTCGACGTGCGCGTCGGA
genomic: GCGCCTTCACCGGCAGCGCCGTGTCCTCCAAGTCTGGCGTCCGCGCCAAGgtgggcatgg ... gcgctcgcagGCTGCCCGCG-CCGTCGTCGACGTGCGCG-CGGA
EST: gi|49468342|gb|BP096203.1|BP096203
EST:     GCGCCTTCACCGGCAGCGCCGTGTCCTCCAAGTCTGGCGTCCGCGCCAAG                         GCTGCCCGCGCCGTCGTCGACGTGCGCGCGGAGAAGAAGATCCGCGTGGCC
genomic: GCGCCTTCACCGGCAGCGCCGTGTCCTCCAAGTCTGGCGTCCGCGCCAAGgtgggcatgg ... gcgctcgcagGCTGCCCGCGCCGTCGTCGACGTGCGCGCGGAGAAGAAGATCCGCGTGGCC
EST: gi|10782292|gb|AV638972.1|AV638972
EST:     GCGCCTTCACCGGCAGCGCCGTGTCCTCCAAGTCTGGCGTCCGCGCCAAG                         GCTGCCCGCGCCGTCGTCGACGTGCGCGCGGAGAAGAAGATCCGCGTGGCC
genomic: GCGCCTTCACCGGCAGCGCCGTGTCCTCCAAGTCTGGCGTCCGCGCCAAGgtgggcatgg ... gcgctcgcagGCTGCCCGCGCCGTCGTCGACGTGCGCGCGGAGAAGAAGATCCGCGTGGCC
EST: gi|10779385|gb|AV636065.1|AV636065
EST:     GCGCCTTCACCGGCAGCGCCGTGTCCTCCAAGTCTGGCGTCCGCGCCAAG                         GCTGCCCGCGCCGTCGTCGACGTGCGCGCGGAGAAGAAGATCCGCGTGGCC
genomic: GCGCCTTCACCGGCAGCGCCGTGTCCTCCAAGTCTGGCGTCCGCGCCAAGgtgggcatgg ... gcgctcgcagGCTGCCCGCGCCGTCGTCGACGTGCGCGCGGAGAAGAAGATCCGCGTGGCC
EST: gi|10779230|gb|AV635910.1|AV635910
EST:     CCAAGTCTGGCGTCCGCGCCAAG                         GCTGCCCGCGCCGTCGTCGACGTGCGCGCGGAGAAGAAGATCCGCGTGGCC
genomic: CCAAGTCTGGCGTCCGCGCCAAGgtgggcatgg ... gcgctcgcagGCTGCCCGCGCCGTCGTCGACGTGCGCGCGGAGAAGAAGATCCGCGTGGCC
EST: gi|10777121|gb|AV633801.1|AV633801
EST:     GCGCCTTCACCGGCAGCGCCGTGTCCTCCAAGTCTGGCGTCCGCGCCAAG                         GCTGCCCGCGCCGTCGTCGACGTGCGCGCGGAGAAGAAGATCCGCGTGGCC
genomic: GCGCCTTCACCGGCAGCGCCGTGTCCTCCAAGTCTGGCGTCCGCGCCAAGgtgggcatgg ... gcgctcgcagGCTGCCCGCGCCGTCGTCGACGTGCGCGCGGAGAAGAAGATCCGCGTGGCC
EST: gi|161803466|gb|FC093069.1|FC093069
EST:     GCGCCTTCACCGGCAGCGCCGTGTCCTCCAAGTCTGGCGTCCGCGCCAAG                         GCTGCCCGCGCCGTCGTCGACGTGCGCGCGGAGAAGAAGATCCGCGTGGCC
genomic: GCGCCTTCACCGGCAGCGCCGTGTCCTCCAAGTCTGGCGTCCGCGCCAAGgtgggcatgg ... gcgctcgcagGCTGCCCGCGCCGTCGTCGACGTGCGCGCGGAGAAGAAGATCCGCGTGGCC
EST: gi|10785162|gb|AV641834.1|AV641834
EST:     GCGCCTTCACCGGCAGCGCCGTGTCCTCCAAGTCTGGCGTCCGCGCCAAG                         GCTGCCCGCGCCGTCGTCGACGTGCGCGCGGAGAAGAAGATCCGCGTGGCC
genomic: GCGCCTTCACCGGCAGCGCCGTGTCCTCCAAGTCTGGCGTCCGCGCCAAGgtgggcatgg ... gcgctcgcagGCTGCCCGCGCCGTCGTCGACGTGCGCGCGGAGAAGAAGATCCGCGTGGCC
EST: gi|10778614|gb|AV635294.1|AV635294
EST:     GCGCCTTCACCGGCAGCGCCGTGTCCTCCAAGTCTGGCGTCCGCGCCAAG                         GCTGCCCGCGCCGTCGTCGACGTGCGCGCGGAGAAGAAGATCCGCGTGGCC
genomic: GCGCCTTCACCGGCAGCGCCGTGTCCTCCAAGTCTGGCGTCCGCGCCAAGgtgggcatgg ... gcgctcgcagGCTGCCCGCGCCGTCGTCGACGTGCGCGCGGAGAAGAAGATCCGCGTGGCC
EST: gi|10778579|gb|AV635259.1|AV635259
EST:     GCGCCTTCACCGGCAGCGCCGTGTCCTCCAAGTCTGGCGTCCGCGCCAAG                         GCTGCCCGCGCCGTCGTCGACGTGCGCGCGGAGAAGAAGATCCGCGTGGCC
genomic: GCGCCTTCACCGGCAGCGCCGTGTCCTCCAAGTCTGGCGTCCGCGCCAAGgtgggcatgg ... gcgctcgcagGCTGCCCGCGCCGTCGTCGACGTGCGCGCGGAGAAGAAGATCCGCGTGGCC
EST: gi|7593398|gb|AW707649.1|AW707649
EST:     GCGCCTTCACCGGCAGCGCCGTGTCCTCCAAGTCTGGCGTCCGCGCCAAG                         GCTGCCCGCGCCGTCGTCGACGTGCGCGCGGAGAAGAAGATCCGCGTGGCC
genomic: GCGCCTTCACCGGCAGCGCCGTGTCCTCCAAGTCTGGCGTCCGCGCCAAGgtgggcatgg ... gcgctcgcagGCTGCCCGCGCCGTCGTCGACGTGCGCGCGGAGAAGAAGATCCGCGTGGCC
EST: gi|49468452|gb|BP096313.1|BP096313
EST:     GCGCCTTCACCGGCAGCGCCGTGTCCTCCAAGTCTGGCGTCCGCGCCAAG                         GCTGCCCGCGCCGTCGTCGACGTGCGCGCGGAGAAGAAGATCCGCGTGGCC
genomic: GCGCCTTCACCGGCAGCGCCGTGTCCTCCAAGTCTGGCGTCCGCGCCAAGgtgggcatgg ... gcgctcgcagGCTGCCCGCGCCGTCGTCGACGTGCGCGCGGAGAAGAAGATCCGCGTGGCC
EST: gi|10779663|gb|AV636343.1|AV636343
EST:     GCGCCTTCACCGGCAGCGCCGTGTCCTCCAAGTCTGGCGTCCGCGCCAAG                         GCTGCCCGCGCCGTCGTCGACGTGCGCGCGGAGAAGAAGATCCGCGTGGCC
genomic: GCGCCTTCACCGGCAGCGCCGTGTCCTCCAAGTCTGGCGTCCGCGCCAAGgtgggcatgg ... gcgctcgcagGCTGCCCGCGCCGTCGTCGACGTGCGCGCGGAGAAGAAGATCCGCGTGGCC
EST: gi|10784478|gb|AV641150.1|AV641150
EST:     GCGCCTTCACCGGCAGCGCCGTGTCCTCCAAGTCTGGCGTCCGCGCCAAG                         GCTGCCCGCGCCGTCGTCGACGTGCGCGCGGAGAAGAAGATCCGCGTGGCC
genomic: GCGCCTTCACCGGCAGCGCCGTGTCCTCCAAGTCTGGCGTCCGCGCCAAGgtgggcatgg ... gcgctcgcagGCTGCCCGCGCCGTCGTCGACGTGCGCGCGGAGAAGAAGATCCGCGTGGCC
EST: gi|10782842|gb|AV639514.1|AV639514
EST:     GCGCCTTCACCGGCAGCGCCGTGTCCTCCAAGTCTGGCGTCCGCGCCAAG                         GCTGCCCGCGCCGTCGTCGACGTGCGCGCGGAGAAGAAGATCCGCGTGGCC
genomic: GCGCCTTCACCGGCAGCGCCGTGTCCTCCAAGTCTGGCGTCCGCGCCAAGgtgggcatgg ... gcgctcgcagGCTGCCCGCGCCGTCGTCGACGTGCGCGCGGAGAAGAAGATCCGCGTGGCC
EST: gi|23366194|gb|BU654014.1|BU654014
EST:     GCGCCTTCACCGGCAGCGCCGTGTCCTCCAAGTCTGGCGTCCGCGCCAAG                         GCTGCCCGCGCCGTCGTCGACGTGCGCGCGGAGAAGAAGATCCGCGTGGCC
genomic: GCGCCTTCACCGGCAGCGCCGTGTCCTCCAAGTCTGGCGTCCGCGCCAAGgtgggcatgg ... gcgctcgcagGCTGCCCGCGCCGTCGTCGACGTGCGCGCGGAGAAGAAGATCCGCGTGGCC
EST: gi|10775697|gb|AV632377.1|AV632377
EST:     GCGCCTTCACCGGCAGCGCCGTGTCCTCCAAGTCTGGCGTCCGCGCCAAG                         GCTGCCCGCGCCGTCGTCGACGTGCGCGCGGAGAAGAAGATCCGCGTGGCC
genomic: GCGCCTTCACCGGCAGCGCCGTGTCCTCCAAGTCTGGCGTCCGCGCCAAGgtgggcatgg ... gcgctcgcagGCTGCCCGCGCCGTCGTCGACGTGCGCGCGGAGAAGAAGATCCGCGTGGCC
EST: gi|10779651|gb|AV636331.1|AV636331
EST:     GCGCCTTCACCGGCAGCGCCGTGTCCTCCAAGTCTGGCGTCCGCGCCAAG                         GCTGCCCGCGCCGTCGTCGACGTGCGCGCGGAGAAGAAGATCCGCGTGGCC
genomic: GCGCCTTCACCGGCAGCGCCGTGTCCTCCAAGTCTGGCGTCCGCGCCAAGgtgggcatgg ... gcgctcgcagGCTGCCCGCGCCGTCGTCGACGTGCGCGCGGAGAAGAAGATCCGCGTGGCC
EST: gi|10786448|gb|AV643120.1|AV643120
EST:     GCGCCTTCACCGGCAGCGCCGTGTCCTCCAAGTCTGGCGTCCGCGCCAAG                         GCTGCCCGCGCCGTCGTCGACGTGCGCGCGGAGAAGAAGATCCGCGTGGCC
genomic: GCGCCTTCACCGGCAGCGCCGTGTCCTCCAAGTCTGGCGTCCGCGCCAAGgtgggcatgg ... gcgctcgcagGCTGCCCGCGCCGTCGTCGACGTGCGCGCGGAGAAGAAGATCCGCGTGGCC
EST: gi|7687060|gb|AW757708.1|AW757708
EST:     GCGCCTTCACCGGCAGCGCCGTGTCCTCCAAGTCTGGCGTCCGCGCCAAG                         GCTGCCCGCGCCGTCGTCGACGTGCGCGCGGAGAAGAAGATCCGCGTGGCC
genomic: GCGCCTTCACCGGCAGCGCCGTGTCCTCCAAGTCTGGCGTCCGCGCCAAGgtgggcatgg ... gcgctcgcagGCTGCCCGCGCCGTCGTCGACGTGCGCGCGGAGAAGAAGATCCGCGTGGCC
EST: gi|10782403|gb|AV639083.1|AV639083
EST:     GCGCCTTCACCGGCAGCGCCGTGTCCTCCAAGTCTGGCGTCCGCGCCAAG                         GCTGCCCGCGCCGTCGTCGACGTGCGCGCGGAGAAGAAGATCCGCGTGGCC
genomic: GCGCCTTCACCGGCAGCGCCGTGTCCTCCAAGTCTGGCGTCCGCGCCAAGgtgggcatgg ... gcgctcgcagGCTGCCCGCGCCGTCGTCGACGTGCGCGCGGAGAAGAAGATCCGCGTGGCC
EST: gi|161796983|gb|FC085640.1|FC085640
EST:     GCGCCTTCACCGGCAGCGCCGTGTCCTCCAAGTCTGGCGTCCGCGCCAAG                         GCTGCCCGCGCCGTCGTCGACGTGCGCGCGGAGAAGAAGATCCGCGTGGCC
genomic: GCGCCTTCACCGGCAGCGCCGTGTCCTCCAAGTCTGGCGTCCGCGCCAAGgtgggcatgg ... gcgctcgcagGCTGCCCGCGCCGTCGTCGACGTGCGCGCGGAGAAGAAGATCCGCGTGGCC
EST: gi|34989789|gb|CF563706.1|CF563706
EST:     GCGCCTTCACCGGCAGCGCCGTGTCCTCCAAGTCTGGCGTCCGCGCCAAG                         GCTGCCCGCGCCGTCGTCGACGTGCGCGCGGAGAAGAAGATCCGCGTGGCC
genomic: GCGCCTTCACCGGCAGCGCCGTGTCCTCCAAGTCTGGCGTCCGCGCCAAGgtgggcatgg ... gcgctcgcagGCTGCCCGCGCCGTCGTCGACGTGCGCGCGGAGAAGAAGATCCGCGTGGCC
EST: gi|161819056|gb|FC108872.1|FC108872
EST:     GCGCCTTCACCGGCAGCGCCGTGTCCTCCAAGTCTGGCGTCCGCGCCAAG                         GCTGCCCGCGCCGTCGTCGACGTGCGCGCGGAGAAGAAGATCCGCGTGGCC
genomic: GCGCCTTCACCGGCAGCGCCGTGTCCTCCAAGTCTGGCGTCCGCGCCAAGgtgggcatgg ... gcgctcgcagGCTGCCCGCGCCGTCGTCGACGTGCGCGCGGAGAAGAAGATCCGCGTGGCC
EST: gi|10776574|gb|AV633254.1|AV633254
EST:     GCGCCTTCACCGGCAGCGCCGTGTCCTCCAAGTCTGGCGTCCGCGCCAAG                         GCTGCCCGCGCCGTCGTCGACGTGCGCGCGGAGAAGAAGATCCGCGTGGCC
genomic: GCGCCTTCACCGGCAGCGCCGTGTCCTCCAAGTCTGGCGTCCGCGCCAAGgtgggcatgg ... gcgctcgcagGCTGCCCGCGCCGTCGTCGACGTGCGCGCGGAGAAGAAGATCCGCGTGGCC
EST: gi|10777605|gb|AV634285.1|AV634285
EST:     GCGCCTTCACCGGCAGCGCCGTGTCCTCCAAGTCTGGCGTCCGCGCCAAG                         GCTGCCCGCGCCGTCGTCGACGTGCGCGCGGAGAAGAAGATCCGCGTGGCC
genomic: GCGCCTTCACCGGCAGCGCCGTGTCCTCCAAGTCTGGCGTCCGCGCCAAGgtgggcatgg ... gcgctcgcagGCTGCCCGCGCCGTCGTCGACGTGCGCGCGGAGAAGAAGATCCGCGTGGCC
EST: gi|161798500|gb|FC083995.1|FC083995
EST:     GCGCCTTCACCGGCAGCGCCGTGTCCTCCAAGTCTGGCGTCCGCGCCAAG                         GCTGCCCGCGCCGTCGTCGACGTGCGCGCGGAGAAGAAGATCCGCGTGGCC
genomic: GCGCCTTCACCGGCAGCGCCGTGTCCTCCAAGTCTGGCGTCCGCGCCAAGgtgggcatgg ... gcgctcgcagGCTGCCCGCGCCGTCGTCGACGTGCGCGCGGAGAAGAAGATCCGCGTGGCC
EST: gi|10777098|gb|AV633778.1|AV633778
EST:     GCGCCTTCACCGGCAGCGCCGTGTCCTCCAAGTCTGGCGTCCGCGCCAAG                         GCTGCCCGCGCCGTCGTCGACGTGCGCGCGGAGAAGAAGATCCGCGTGGCC
genomic: GCGCCTTCACCGGCAGCGCCGTGTCCTCCAAGTCTGGCGTCCGCGCCAAGgtgggcatgg ... gcgctcgcagGCTGCCCGCGCCGTCGTCGACGTGCGCGCGGAGAAGAAGATCCGCGTGGCC
EST: gi|10781298|gb|AV637978.1|AV637978
EST:     CTTCACCGGCAGCGCCGTGTCCTCCAAGTCTGGCGTCCGCGCCAAG                         GCTGCCCGCGCCGTCGTCGACGTGCGCGCGGAGAAGAAGATCCGCGTGGCC
genomic: CTTCACCGGCAGCGCCGTGTCCTCCAAGTCTGGCGTCCGCGCCAAGgtgggcatgg ... gcgctcgcagGCTGCCCGCGCCGTCGTCGACGTGCGCGCGGAGAAGAAGATCCGCGTGGCC
EST: gi|10778390|gb|AV635070.1|AV635070
EST:     GCGCCTTCACCGGCAGCGCCGTGTCCTCCAAGTCTGGCGTCCGCGCCAAG                         GCTGCCCGCGCCGTCGTCGACGTGCGCGCGGAGAAGAAGATCCGCGTGGCC
genomic: GCGCCTTCACCGGCAGCGCCGTGTCCTCCAAGTCTGGCGTCCGCGCCAAGgtgggcatgg ... gcgctcgcagGCTGCCCGCGCCGTCGTCGACGTGCGCGCGGAGAAGAAGATCCGCGTGGCC
EST: gi|10783028|gb|AV639700.1|AV639700
EST:     GCGCCTTCACCGGCAGCGCCGTGTCCTCCAAGTCTGGCGTCCGCGCCAAG                         GCTGCCCGCGCCGTCGTCGACGTGCGCGCGGAGAAGAAGATCCGCGTGGCC
genomic: GCGCCTTCACCGGCAGCGCCGTGTCCTCCAAGTCTGGCGTCCGCGCCAAGgtgggcatgg ... gcgctcgcagGCTGCCCGCGCCGTCGTCGACGTGCGCGCGGAGAAGAAGATCCGCGTGGCC
EST: gi|49470785|gb|BP098646.1|BP098646
EST:     GCGCCTTCACCGGCAGCGCCGTGTCCTCCAAGTCTGGCGTCCGCGCCAAG                         GCTGCCCGCGCCGTCGTCGACGTGCGCGCGGAGAAGAAGATCCGCGTGGCC
genomic: GCGCCTTCACCGGCAGCGCCGTGTCCTCCAAGTCTGGCGTCCGCGCCAAGgtgggcatgg ... gcgctcgcagGCTGCCCGCGCCGTCGTCGACGTGCGCGCGGAGAAGAAGATCCGCGTGGCC
EST: gi|10784337|gb|AV641009.1|AV641009
EST:     GCGCCTTCACCGGCAGCGCCGTGTCCTCCAAGTCTGGCGTCCGCGCCAAG                         GCTGCCCGCGCCGTCGTCGACGTGCGCGCGGAGAAGAAGATCCGCGTGGCC
genomic: GCGCCTTCACCGGCAGCGCCGTGTCCTCCAAGTCTGGCGTCCGCGCCAAGgtgggcatgg ... gcgctcgcagGCTGCCCGCGCCGTCGTCGACGTGCGCGCGGAGAAGAAGATCCGCGTGGCC
EST: gi|161823171|gb|FC107469.1|FC107469
EST:     GCGCCTTCACCGGCAGCGCCGTGTCCTCCAAGTCTGGCGTCCGCGCCAAG                         GCTGCCCGCGCCGTCGTCGACGTGCGCGCGGAGAAGAAGATCCGCGTGGCC
genomic: GCGCCTTCACCGGCAGCGCCGTGTCCTCCAAGTCTGGCGTCCGCGCCAAGgtgggcatgg ... gcgctcgcagGCTGCCCGCGCCGTCGTCGACGTGCGCGCGGAGAAGAAGATCCGCGTGGCC
EST: gi|161807764|gb|FC096498.1|FC096498
EST:     GCGCCTTCACCGGCAGCGCCGTGTCCTCCAAGTCTGGCGTCCGCGCCAAG                         GCTGCCCGCGCCGTCGTCGACGTGCGCGCGGAGAAGAAGATCCGCGTGGCC
genomic: GCGCCTTCACCGGCAGCGCCGTGTCCTCCAAGTCTGGCGTCCGCGCCAAGgtgggcatgg ... gcgctcgcagGCTGCCCGCGCCGTCGTCGACGTGCGCGCGGAGAAGAAGATCCGCGTGGCC

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
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gtgggcatggctcggcttttgcttgcggacttgggttcttgggtcgcacagcccagcactcgctgggtcttcggcgggcttctgctacgtgtgtgatcagttgataaataagatagttgggttgccaggtcaacgttcaccgatcctactctcttgcatcgcgctcgcagGCTGCCCGCGCCGTCGTCGACGTGCGCGCGGAGAAGAAGATCCGCGTGGCCATCAACGGCTTCGGTCGCATTGGCCGCAACTTCCTGCGCTGCTGGCACG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT