1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...gctgtccgcttgccaacgcattcagccatatgccagttttgaccactaacacgatgctctcttctctttcttttgcattgtggtggctactcgtctgtagGTACATCAAACAAGGCCGGCTACCGAGGCGTACGGCGCCGGCCATGGGGCTCCTACGCCGCCGAGATTCGGGACGCAGGCTGCGGCAAGCGCCG
species | Chlamydomonas reinhardtii |
transcript | EDP09589 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: CCCAGACTATGAGGACGCCGCGCAAGGCGCGCAAGGCATAACGCATGATG GTACATCAAACAAGGCCGGCTACCGAGGCGTACGGCGCCGGTCATGGGGCTEST: gi|22065350|gb|BQ816321.1|BQ816321
genomic: CCCAGACTATGAGGACGCCGCGCAAGGCGCGCAAGGCATAACGCATGATGgtaagcaatt ... tcgtctgtagGTACATCAAACAAGGCCGGCTACCGAGGCGTACGGCGCCGGCCATGGGGCT
EST: CCCAGACTATGAGGACGCCGCGCAAGGCGCGCAAGGCATAACGCATGATG GTACATCAAACAAGGCCGGCTACCGAGGCGTACGGCGCCGGCCATGGGGCTEST: gi|10126136|gb|BE724840.1|BE724840
genomic: CCCAGACTATGAGGACGCCGCGCAAGGCGCGCAAGGCATAACGCATGATGgtaagcaatt ... tcgtctgtagGTACATCAAACAAGGCCGGCTACCGAGGCGTACGGCGCCGGCCATGGGGCT
EST: CCCAGACTATGAGGACGCCGCACAAGGCGCGCAAGGCATAACGCATGATG GTACATCAAACAAGGCCGGCTACCGAGGCGTACGGCGCCGGCCATGGGGCT
genomic: CCCAGACTATGAGGACGCCGCGCAAGGCGCGCAAGGCATAACGCATGATGgtaagcaatt ... tcgtctgtagGTACATCAAACAAGGCCGGCTACCGAGGCGTACGGCGCCGGCCATGGGGCT
ctaacacgatgctctcttctctttcttttgcattgtggtggctactcgtctgtagGTACATCAAACAAGGCCGGCTACCGAGGCGTACGGCGCCGGCCATGGGGCTCCTACGCCGCCGAGATTCGGGACGCAGGCTGCGGCAAGCGCCG
cactaac putative branch site (score: 1)
ctcgtct putative PPT
tttctttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gctgtccgcttgccaacgcattcagccatatgccagttttgaccactaacacgatgctctcttctctttcttttgcattgtggtggctactcgtctgtagGTACATCAAACAAGGCCGGCTACCGAGGCGTACGGCGCCGGCCATGGGGCTCCTACGCCGCCGAGATTCGGGACGCAGGCTGCGGCAAGCGCCG
- - - - - - -caacgca
- - - - - - - - - - - -agccata
- - - - - - - - - - - - - - - - - - - - - - actaaca