Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   		15  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgtgtgggttttgcctttctgcacgaggggatggggcttgatggggccgacaccgggggccgtgcaaagcgtgtgggcacgggtttgtgtacgactgagcgcgcactgctgcgccccctcgccccgtccgcccgccgcctcgcctccctcctatcccgcttccttcttcctccggcagGTGATGTCGGCCTTCATCGCGGGCTTCTCCACCTACGCGCCGCTGCTCAGCCGCATCCAGGCCGAGTTCGACCGAGCGCTGAACGAGGGCGTGCGCAGCG

Basic information

species Chlamydomonas reinhardtii
transcript EDP09572
intron # 2
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|161824072|gb|FC107733.1|FC107733
EST:     AGCGCGACCCCAAGCTGTCAGCCAACCTGTCGCTGGACGGGCACCGGCAG                         GTGATGTCGGCCTTCATCGCGGGCTTCTCCACCTACGCGCCGCTGCTCAGC
genomic: AGCGCGACCCGAAGCTGTCAGCTAACCTGTCGCTGGACGGGCACAGGCAGgtatgtgtgg ... cctccggcagGTGATGTCGGCCTTCATCGCGGGCTTCTCCACCTACGCGCCGCTGCTCAGC
EST: gi|161791425|gb|FC077996.1|FC077996
EST:     AGCGCGACCCCAAGCTGTCAGCCAACCTGTCGCTGGACGGGCACCGGCAG                         GTGATGTCGGCCTTCATCGCGGGCTTCTCCACCTACGCGCCGCTGCTCAGC
genomic: AGCGCGACCCGAAGCTGTCAGCTAACCTGTCGCTGGACGGGCACAGGCAGgtatgtgtgg ... cctccggcagGTGATGTCGGCCTTCATCGCGGGCTTCTCCACCTACGCGCCGCTGCTCAGC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ccgtccgcccgccgcctcgcctccctcctatcccgcttccttcttcctccggcagGTGATGTCGGCCTTCATCGCGGGCTTCTCCACCTACGCGCCGCTGCTCAGCCGCATCCAGGCCGAGTTCGACCGAGCGCTGAACGAGGGCGTGCGCAGCG
           ccgcctcgcctccctc  CT-rich tract