Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagtgattgatctcagaagggatgcagctatttgcgcaggggtattgaccttcaaggagtcgttcgcaaactgacggttccggtgctctgctgaccagttttcttgctgcgattgcttttgcggctgcagAGGCCAACTTCTACTCGTGCGCTGCCTACGGCAAG

Basic information

species Chlamydomonas reinhardtii
transcript EDP09352
intron # 2
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|22050043|gb|BQ809040.1|BQ809040
EST:     TTTGCGCTCAACCTGGAGTACCTGG                         AGGCCAACTTCTACTCGTGCGCTGCCTACGGCAAG
genomic: TTTGCGCTCAACCTGGAGTACCTGGgtgagtgatt ... gcggctgcagAGGCCAACTTCTACTCGTGCGCTGCCTACGGCAAG
EST: gi|22077026|gb|BQ825802.1|BQ825802
EST:     TTTGCGCTCAACCTGGAGTACCTGG                         AGGCCAACTTCTACTCGTGCGCTGCCTACGGCAAG
genomic: TTTGCGCTCAACCTGGAGTACCTGGgtgagtgatt ... gcggctgcagAGGCCAACTTCTACTCGTGCGCTGCCTACGGCAAG
EST: gi|16433061|gb|BI998287.1|BI998287
EST:     TTTGCGCTCAACCTGGAGTACCTGG                         AGGCCAACTTCTACTCGTGCGCTGCCTACGGCAAG
genomic: TTTGCGCTCAACCTGGAGTACCTGGgtgagtgatt ... gcggctgcagAGGCCAACTTCTACTCGTGCGCTGCCTACGGCAAG
EST: gi|22073616|gb|BQ822954.1|BQ822954
EST:     TTTGCGCTCAACCTGGAGTACCTGG                         AGGCCAACTTCTACTCGTGCGCTGCCTACGGCAAG
genomic: TTTGCGCTCAACCTGGAGTACCTGGgtgagtgatt ... gcggctgcagAGGCCAACTTCTACTCGTGCGCTGCCTACGGCAAG
EST: gi|22072330|gb|BQ821668.1|BQ821668
EST:     TTTGCGCTCAACCTGGAGTACCTGG                         AGGCCAACTTCTACTCGTGCGCTGCCTACGGCAAG
genomic: TTTGCGCTCAACCTGGAGTACCTGGgtgagtgatt ... gcggctgcagAGGCCAACTTCTACTCGTGCGCTGCCTACGGCAAG
EST: gi|15697123|gb|BI721428.1|BI721428
EST:     TTTGCGCTCAACCTGGAGTACCTGG                         AGGCCAACTTCTACTCGTGCGCTGCCTACGGCAAG
genomic: TTTGCGCTCAACCTGGAGTACCTGGgtgagtgatt ... gcggctgcagAGGCCAACTTCTACTCGTGCGCTGCCTACGGCAAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ggttccggtgctctgctgaccagttttcttgctgcgattgcttttgcggctgcagAGGCCAACTTCTACTCGTGCGCTGCCTACGGCAAG
             tgctgac  putative branch site (score: 2)
                                        cttttgc  putative PPT
                       ttttctt  TA-rich tract