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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagctcgggctgcgtgctgaccagcagggcagtttggagcaaagcggcgccgggtgcaggatgtaccgggcccatcccagtgggcccactcacacccacacccgccgacccctacctcaccaaccgggccacgctctcttcccgacgctcctctccgccccccagGCGTACATGTACAACCAGGTGACCTGGGCGCTGGAGATCCTAGGCCCCACCGTGACGGCGCACGACCTGGGTCGCATGCACGAGGCCATCATCGCCACCT

Basic information

species Chlamydomonas reinhardtii
transcript EDP09268
intron # 2
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|14239746|gb|BG858562.1|BG858562
EST:     CACGGGCATATGGGTCCACTACACG                         GCGTACATGTACAACCAGGTGACCTGGGCGCTGGAGATCCTAGGCCCCACC
genomic: CACGGGCATATGGGTCCACTACACGgtaagctcgg ... cgccccccagGCGTACATGTACAACCAGGTGACCTGGGCGCTGGAGATCCTAGGCCCCACC






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cctacctcaccaaccgggccacgctctcttcccgacgctcctctccgccccccagGCGTACATGTACAACCAGGTGACCTGGGCGCTGGAGATCCTAGGCCCCACCGTGACGGCGCACGACCTGGGTCGCATGCACGAGGCCATCATCGCCACCT
   acctcac  putative branch site (score: 3)
                       ctctcttcccgacgct  putative PPT