1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...gactgcgtcacaccgtgggtcttactgggaacggggaaactcacctccccctccaccacctgccacacacacacacacgcacgcacgcaatgaatcgcagGCTCCTGGAACCGGCTGTTCGGGCTGCTACTGCTGGACCAGCCAGTGGGCACCGGCTACAGCCTGGCTGCCAACGGCAGTAGCAGCGTGCCGCCGGACGA
species | Chlamydomonas reinhardtii |
transcript | EDP09159 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: GCTGGGGCCGTGGTCGGTGCGCGAGGACCTGAGTGTGGAGCCCAACCCGG GCTCCTGGAACCGGCTGTTCGGGCTGCTACTGCTGGACCAGCCAGTGGGCA
genomic: GCTGGGGCCGTGGTCGGTGCGCGAGGACCTGAGTGTGGAGCCCAACCCGGgtacgtgcgg ... tgaatcgcagGCTCCTGGAACCGGCTGTTCGGGCTGCTACTGCTGGACCAGCCAGTGGGCA
tccccctccaccacctgccacacacacacacacgcacgcacgcaatgaatcgcagGCTCCTGGAACCGGCTGTTCGGGCTGCTACTGCTGGACCAGCCAGTGGGCACCGGCTACAGCCTGGCTGCCAACGGCAGTAGCAGCGTGCCGCCGGACGA
aatgaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gactgcgtcacaccgtgggtcttactgggaacggggaaactcacctccccctccaccacctgccacacacacacacacgcacgcacgcaatgaatcgcagGCTCCTGGAACCGGCTGTTCGGGCTGCTACTGCTGGACCAGCCAGTGGGCACCGGCTACAGCCTGGCTGCCAACGGCAGTAGCAGCGTGCCGCCGGACGA
- - - -tcacacc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ccacaca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - acacaca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -cacgcac