1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
...cgtcggtttagtttactggcatagacagcttgcacagctatagttacacatgtgggcagctcggcgcttcaacttctatgtgtgtgtgtctcccccacagGGCGCCTACCGCGACGACAACGGCCAGCCGGTGGTGCTGGACGCTGTGCGGGAGGCGGAGCGCCGCGTGGCGGGCAGCCACTTCATG
species | Chlamydomonas reinhardtii |
transcript | EDP08586 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: CTGAGAAGTTCCTGGCCGACACCAACCCCATCAAGATGAACCTGGGCGTG GGCGCCTACCGCGACGACAACGGCCAGCCGGTGGTGCTGGACGCTGTGCGGEST: gi|15695845|gb|BI720150.1|BI720150
genomic: CTGAGAAGTTCCTGGCCGACACCAACCCCATCAAGATGAACCTGGGCGTGgtaagcagac ... tcccccacagGGCGCCTACCGCGACGACAACGGCCAGCCGGTGGTGCTGGACGCTGTGCGG
EST: CTGAGAAGTTCCTGGCCGACACCAACCCCATCAAGATGAACCTGGGCGTG GGCGCCTACCGCGACGACAACGGCCAGCCGGTGGTGCTGGACGCTGTGCGGEST: gi|10785973|gb|AV642645.1|AV642645
genomic: CTGAGAAGTTCCTGGCCGACACCAACCCCATCAAGATGAACCTGGGCGTGgtaagcagac ... tcccccacagGGCGCCTACCGCGACGACAACGGCCAGCCGGTGGTGCTGGACGCTGTGCGG
EST: CTGACAAGTTCCTGGCCGACACCAACCCCATCAAGATGAACCTGGGCGTG GGCGCCTACCGCGACGACAACGGCCAGCCGGTGGTGCTGGACGCTGTGCGG
genomic: CTGAGAAGTTCCTGGCCGACACCAACCCCATCAAGATGAACCTGGGCGTGgtaagcagac ... tcccccacagGGCGCCTACCGCGACGACAACGGCCAGCCGGTGGTGCTGGACGCTGTGCGG
acacatgtgggcagctcggcgcttcaacttctatgtgtgtgtgtctcccccacagGGCGCCTACCGCGACGACAACGGCCAGCCGGTGGTGCTGGACGCTGTGCGGGAGGCGGAGCGCCGCGTGGCGGGCAGCCACTTCATG
tgtctccccc CT-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| cgtcggtttagtttactggcatagacagcttgcacagctatagttacacatgtgggcagctcggcgcttcaacttctatgtgtgtgtgtctcccccacagGGCGCCTACCGCGACGACAACGGCCAGCCGGTGGTGCTGGACGCTGTGCGGGAGGCGGAGCGCCGCGTGGCGGGCAGCCACTTCATG
- - - -ttagttt
- - - - - - - - - - - agacagc
- - - - - - - - - - - - - - - - -acagcta
- - - - - - - - - - - - - - - - - - - - - - -acacatg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgtgtgt