1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
gtgagttgtgctggcggtagtggtagtgggacgcgttgccctggcggccagcgttgcctggcagggtagagtgacgtgaagactcggcgcaatgcgctgtgcgagcctgcaagccgtacggccatccagctacgtgccgcagctcatcccgcttctgacccgatatccgttttgcacgactgcagGAAGCGGCTTCAAAAGATGATCAGCACCATGCGCGAGCGCATGGAGGCTAAGCTGGGCAACAGCAACAACAACGCGTTCCGCATGCGCAAGCTGTTCAAG
species | Chlamydomonas reinhardtii |
transcript | EDP07948 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: ACCTCCAGCTTGACAAACATCTACAAGAGCTCCTTCAACCGTGTGGGAGA GAAGCGGCTTCAAAAGATGATCAGCACCATGCGCGAGCGCATGGAGGCTAAEST: gi|6546138|gb|AV391922.1|AV391922
genomic: ACCTCCAGCTTGACAAACATCTACAAGAGCTCCTTCAACCGTGTGGGAGAgtgagttgtg ... acgactgcagGAAGCGGCTTCAAAAGATGATCAGCACCATGCGCGAGCGCATGGAGGCTAA
EST: ACCTCCAGCTTGACAAACATCTACAAGAGCTCCTTCAACCGTGTGGGAGA GAAGCGGCTTCAAAAGATGATCAGCACCATGCGCGAGCGCATGGAGGCCAAEST: gi|16428846|gb|BI994072.1|BI994072
genomic: ACCTCCAGCTTGACAAACATCTACAAGAGCTCCTTCAACCGTGTGGGAGAgtgagttgtg ... acgactgcagGAAGCGGCTTCAAAAGATGATCAGCACCATGCGCGAGCGCATGGAGGCTAA
EST: ACCTCCAGCTTGACAAACATCTACAAGAGCTCCTTCAACCGTGTGGGAGA GAAGCGGCTTCAAAAGATGATCAGCACCATGCGCGAGCGCATGGAGGCTAAEST: gi|161795781|gb|FC087609.1|FC087609
genomic: ACCTCCAGCTTGACAAACATCTACAAGAGCTCCTTCAACCGTGTGGGAGAgtgagttgtg ... acgactgcagGAAGCGGCTTCAAAAGATGATCAGCACCATGCGCGAGCGCATGGAGGCTAA
EST: ACCTCCAGCTTGACAAACATCTACAAGAGCTCCTTCAACCGTGTGGGAGA GAAGCGGCTTCAAAAGATGATCAGCACCATGCGCGAGCGCATGGAGGCTAAEST: gi|9210131|gb|BE337046.1|BE337046
genomic: ACCTCCAGCTTGACAAACATCTACAAGAGCTCCTTCAACCGTGTGGGAGAgtgagttgtg ... acgactgcagGAAGCGGCTTCAAAAGATGATCAGCACCATGCGCGAGCGCATGGAGGCTAA
EST: ACCTCCAGCTTGACAAACATCTACAAGAGCTCCTTCAACCGTGTGGGAGA GAAGCGGCTTCAAAAGAAGATCAGCEST: gi|23362331|gb|BU650167.1|BU650167
genomic: ACCTCCAGCTTGACAAACATCTACAAGAGCTCCTTCAACCGTGTGGGAGAgtgagttgtg ... acgactgcagGAAGCGGCTTCAAAAGATGATCAGC
EST: ACCTCCAGCTTGACAAACATCTACAAGAGCTCCTTCAACCGTGTGGGAGA GAAGCGGCTTCAAAAGATGATCAGCACCATGCGCGAGCGCATGGAGGCCAA
genomic: ACCTCCAGCTTGACAAACATCTACAAGAGCTCCTTCAACCGTGTGGGAGAgtgagttgtg ... acgactgcagGAAGCGGCTTCAAAAGATGATCAGCACCATGCGCGAGCGCATGGAGGCTAA
tacgtgccgcagctcatcccgcttctgacccgatatccgttttgcacgactgcagGAAGCGGCTTCAAAAGATGATCAGCACCATGCGCGAGCGCATGGAGGCTAAGCTGGGCAACAGCAACAACAACGCGTTCCGCATGCGCAAGCTGTTCAAG
ttctgac putative branch site (score: 2)
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgagttgtgctggcggtagtggtagtgggacgcgttgccctggcggccagcgttgcctggcagggtagagtgacgtgaagactcggcgcaatgcgctgtgcgagcctgcaagccgtacggccatccagctacgtgccgcagctcatcccgcttctgacccgatatccgttttgcacgactgcagGAAGCGGCTTCAAAAGATGATCAGCACCATGCGCGAGCGCATGGAGGCTAAGCTGGGCAACAGCAACAACAACGCGTTCCGCATGCGCAAGCTGTTCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT