1 5' 3' | 2 5' 3' | 3 5' 3' |
gtgagctggaagctgcaaggttgcacattttgccatcttatgctaccgcgatgccacttcaatgggtggggttcaggacggaacatgccggctgcacaacaattactgtaccgaacgctcagcttgtgctgaatgtggcgcctgtggcctctcgcgtggcctcctgcgtgcctccacctgcttccaccacacacagGTGCACCCAGAGCACTCTCTGGCGGGGGCCTCAGATGGGGACACGCTGAAGGACATTGGGATAGAAGGTGTGCACATGG
species | Chlamydomonas reinhardtii |
transcript | EDP07876 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: TGAAGCGGCACGGCGGCGCCCTGCCGGAACTGTCGCTGTACAAGGACGTG GTGCACCCAGAGCACTCTCTGGCGGGGGCCTCAGATGGGGACACGCTGAAGEST: gi|6542176|gb|AV387960.1|AV387960
genomic: TGAAGCGGCACGGCGGCGCCCTGCCGGAACTGTCGCTGTACAAGGACGTGgtgagctgga ... ccacacacagGTGCACCCAGAGCACTCTCTGGCGGGGGCCTCAGATGGGGACACGCTGAAG
EST: TGAAGCGGCACGGCGGCGCCCTGCCGGAACTGTCGCTGTACAAGGACGTG GTGCACCCAGAGCACTCTCTGGCGGGGGCCTCAGATGGGGACACGCTGAAGEST: gi|23366360|gb|BU654180.1|BU654180
genomic: TGAAGCGGCACGGCGGCGCCCTGCCGGAACTGTCGCTGTACAAGGACGTGgtgagctgga ... ccacacacagGTGCACCCAGAGCACTCTCTGGCGGGGGCCTCAGATGGGGACACGCTGAAG
EST: TGAAGCGGCACGGCGGCGCCCTGCCGGAACTGTCGCTGTACAAGGACGTG GTGCACCCAGAGCACTCTCTGGCGGGGGCCTCAGATGGGGACACGCTGAAGEST: gi|22072783|gb|BQ822121.1|BQ822121
genomic: TGAAGCGGCACGGCGGCGCCCTGCCGGAACTGTCGCTGTACAAGGACGTGgtgagctgga ... ccacacacagGTGCACCCAGAGCACTCTCTGGCGGGGGCCTCAGATGGGGACACGCTGAAG
EST: TGAAGCGGCACGGCGGCGCCCTGCCGGAACTGTCGCTGTACAAGGACGTG GTGCACCCAGAGCACTCTCTGGCGGGGGCCTCAGATGGGGACACGCTGAAGEST: gi|14228630|gb|BG847446.1|BG847446
genomic: TGAAGCGGCACGGCGGCGCCCTGCCGGAACTGTCGCTGTACAAGGACGTGgtgagctgga ... ccacacacagGTGCACCCAGAGCACTCTCTGGCGGGGGCCTCAGATGGGGACACGCTGAAG
EST: TGAAGCGGCACGGCGGCGCCCTGCCGGAACTGTCGCTGTACAAGGACGTG GTGCACCCAGAGCACTCTCTGGCGGGGGCCTCAGATGGGGACACGCTGAAGEST: gi|14225123|gb|BG843939.1|BG843939
genomic: TGAAGCGGCACGGCGGCGCCCTGCCGGAACTGTCGCTGTACAAGGACGTGgtgagctgga ... ccacacacagGTGCACCCAGAGCACTCTCTGGCGGGGGCCTCAGATGGGGACACGCTGAAG
EST: TGAAGCGGCACGGCGGCGCCCTGCCGGAACTGTCGCTGTACAAGGACGTG GTGCACCCAGAGCACTCTCTGGCGGGGGCCTCAGATGGGGACACGCTGAAGEST: gi|7426840|gb|AW661013.1|AW661013
genomic: TGAAGCGGCACGGCGGCGCCCTGCCGGAACTGTCGCTGTACAAGGACGTGgtgagctgga ... ccacacacagGTGCACCCAGAGCACTCTCTGGCGGGGGCCTCAGATGGGGACACGCTGAAG
EST: TGAAGCGGCACGGCGGCGCCCTGCCGGAACTGTCGCTGTACAAGGACGTG GTGCACCCAGAGCACTCTCTGGCGGNGGCCTCAGATGGNGACACGCTGAAG
genomic: TGAAGCGGCACGGCGGCGCCCTGCCGGAACTGTCGCTGTACAAGGACGTGgtgagctgga ... ccacacacagGTGCACCCAGAGCACTCTCTGGCGGGGGCCTCAGATGGGGACACGCTGAAG
ctgtggcctctcgcgtggcctcctgcgtgcctccacctgcttccaccacacacagGTGCACCCAGAGCACTCTCTGGCGGGGGCCTCAGATGGGGACACGCTGAAGGACATTGGGATAGAAGGTGTGCACATGG
cttccacc CT-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgagctggaagctgcaaggttgcacattttgccatcttatgctaccgcgatgccacttcaatgggtggggttcaggacggaacatgccggctgcacaacaattactgtaccgaacgctcagcttgtgctgaatgtggcgcctgtggcctctcgcgtggcctcctgcgtgcctccacctgcttccaccacacacagGTGCACCCAGAGCACTCTCTGGCGGGGGCCTCAGATGGGGACACGCTGAAGGACATTGGGATAGAAGGTGTGCACATGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG