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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gcaagtgccgcgcgtgcagctagtgcccccgcgctgcgccgtttcgtgcagttgcacctgcgggatcgtcagtactaacaaggccgacatgcgcctggcccacatcaactgcaggccatgaaatctaatgccttacgcctggtcttatcttcccccgcagGTTCATCGTTCATGCCTGGCCGGTCAGCTCGCCTGCCGAGGCGATGGACCTGATCAAGGGGGCGTCAGACCCCAGTGCCTCCCACAACTGCTTCGCCTAC

Basic information

species Chlamydomonas reinhardtii
transcript EDP07809
intron # 2
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|49464111|gb|BP092024.1|BP092024
EST:     TGGACGCTGCAAAGCTATGTGCTGTACGAGAGCGAGGTGAAGAAATCAAA                         GTTCATCGTTCATGCCTGGCCGGTCAGCTCGCCTGCCGAGGCGATGGACCT
genomic: TGGACGCTGCAAAGCTATGTGCTGTACGAGAGCGAGGTGAAGAAATCAAAgcaagtgccg ... tcccccgcagGTTCATCGTTCATGCCTGGCCGGTCAGCTCGCCTGCCGAGGCGATGGACCT
EST: gi|14239062|gb|BG857878.1|BG857878
EST:     TGGACGCTGCAAAGCTATGTGCTGTACGAGAGCGAGGTGAAGAAATCAAA                         GTTCATCGTTCATGCCTGGCCGGTCAGCTCGCCTGCCGAGGCGATGGACCT
genomic: TGGACGCTGCAAAGCTATGTGCTGTACGAGAGCGAGGTGAAGAAATCAAAgcaagtgccg ... tcccccgcagGTTCATCGTTCATGCCTGGCCGGTCAGCTCGCCTGCCGAGGCGATGGACCT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

caactgcaggccatgaaatctaatgccttacgcctggtcttatcttcccccgcagGTTCATCGTTCATGCCTGGCCGGTCAGCTCGCCTGCCGAGGCGATGGACCTGATCAAGGGGGCGTCAGACCCCAGTGCCTCCCACAACTGCTTCGCCTAC
                        gccttac  putative branch site (score: 3)
                                     tcttatcttcccccgc  putative PPT
               aaatctaat  TA-rich tract