1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
gtaagttggtctggccgtgggagcaaacatccgactttgactggcctggcacccttccctgcagAGACATCTGCTCGCCAAATTGAGCAAGCCTTCAAGGAGTTTGCGGCTCGCGATGACATCGCGGTCATCCTTATCTCCCAGCAAGTAGCAGGGCAAATCCG
species | Chlamydomonas reinhardtii |
transcript | EDP07785 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: CGGGAACGTGGACCTGCGCAAGAAGCGCAACTACCTGGTTGTAGACTCCA AGACATCTGCTCGTCAAATTGAGCAAGCCTTCAAGGAGTTTGCGGCTCGCGEST: gi|23364980|gb|BU652800.1|BU652800
genomic: CGGGAACGTGGACCTGCGCAAGAAGCGCAACTACCTGGTTGTAGACTCCAgtaagttggt ... ttccctgcagAGACATCTGCTCGCCAAATTGAGCAAGCCTTCAAGGAGTTTGCGGCTCGCG
EST: GGAACGTGGACCTGCGCAAGAAGCGCAACTACCTGGTTGTAGACTCCA AGACATCTGCTCGCCAAATTGAGCAAGCCTTCAAGGAGTTTGCGGCTCGCGEST: gi|15700217|gb|BI724522.1|BI724522
genomic: GGAACGTGGACCTGCGCAAGAAGCGCAACTACCTGGTTGTAGACTCCAgtaagttggt ... ttccctgcagAGACATCTGCTCGCCAAATTGAGCAAGCCTTCAAGGAGTTTGCGGCTCGCG
EST: CGGGAACGTGGACCTGCGCAAGAAGCGCAACTACCTGGTTGTAGACTCCA AGACATCTGCTCGCCAAATTGAGCAAGCCTTCAAGGAGTTTGCGGCTCGCGEST: gi|239841476|gb|GR283333.1|GR283333
genomic: CGGGAACGTGGACCTGCGCAAGAAGCGCAACTACCTGGTTGTAGACTCCAgtaagttggt ... ttccctgcagAGACATCTGCTCGCCAAATTGAGCAAGCCTTCAAGGAGTTTGCGGCTCGCG
EST: CGGGAACGTGGACCTGCGCAAGAAGCGCAACTACCTGGTTGTAGACTCCA AGACATCTGCTCGCCAAATTGAGCAAGCCTTCAAGGAGTTTGCGGCTCGCG
genomic: CGGGAACGTGGACCTGCGCAAGAAGCGCAACTACCTGGTTGTAGACTCCAgtaagttggt ... ttccctgcagAGACATCTGCTCGCCAAATTGAGCAAGCCTTCAAGGAGTTTGCGGCTCGCG
tctggccgtgggagcaaacatccgactttgactggcctggcacccttccctgcagAGACATCTGCTCGCCAAATTGAGCAAGCCTTCAAGGAGTTTGCGGCTCGCGATGACATCGCGGTCATCCTTATCTCCCAGCAAGTAGCAGGGCAAATCCG
ctttgac putative branch site (score: 4)
cacccttccct putative PPT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagttggtctggccgtgggagcaaacatccgactttgactggcctggcacccttccctgcagAGACATCTGCTCGCCAAATTGAGCAAGCCTTCAAGGAGTTTGCGGCTCGCGATGACATCGCGGTCATCCTTATCTCCCAGCAAGTAGCAGGGCAAATCCG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG