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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgggtcgttctggcgaagcgtcttctaggccgccagggtgtggatctgccgctcagcacatactgagattacctacgcgttttgctgccgcagTTAACGCTGGAAAGAACAAGCCTGGTGCGGCTCAGACTGTGAGCGGCAAGCCTGCAGCCAAGCTGGAGCAGGAGACGGAGGACTTCCATC

Basic information

species Chlamydomonas reinhardtii
transcript EDP07421
intron # 2
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|10768800|gb|AV619625.1|AV619625
EST:     GCACGGCGGCAAGGTGCAGCTGTGGAGACGTCGCAGAAAT                         TTAACGCTGGAAAGAACAAGCCTGGTGCGGCTCAGACTGTGAGCGGCAAGC
genomic: GCACGGCGGCAAGGTGCAGCTGTGGAGACGTCGCAGAAATgtgggtcgtt ... gctgccgcagTTAACGCTGGAAAGAACAAGCCTGGTGCGGCTCAGACTGTGAGCGGCAAGC
EST: gi|10768260|gb|AV619085.1|AV619085
EST:     GCACGGCGGCAAGGTGCAGCTGTGGAGACGTCGCAGAAAT                         TTAACGCTGGAAAGAACAAGCCTGGTGCGGCTCAGACTGTGAGCGGCAAGC
genomic: GCACGGCGGCAAGGTGCAGCTGTGGAGACGTCGCAGAAATgtgggtcgtt ... gctgccgcagTTAACGCTGGAAAGAACAAGCCTGGTGCGGCTCAGACTGTGAGCGGCAAGC
EST: gi|49459062|gb|BP086975.1|BP086975
EST:     GCACGGCGGCAAGGTGCAGCTGTGGAGACGTCGCAGAAAT                         TTAACGCTGGAAAGAACAAGCCTGGTGCGGCTCAGACTGTGAGCGGCAAGC
genomic: GCACGGCGGCAAGGTGCAGCTGTGGAGACGTCGCAGAAATgtgggtcgtt ... gctgccgcagTTAACGCTGGAAAGAACAAGCCTGGTGCGGCTCAGACTGTGAGCGGCAAGC
EST: gi|7413146|gb|AW651900.1|AW651900
EST:     GCACGGCGGCAAGGTGCAGCTGTGGAGACGTCGCAGAAAT                         TTAACGCTGGAAAGAACAAGCCTGGTGCGGCTCAGACTGTGAGCGGCAAGC
genomic: GCACGGCGGCAAGGTGCAGCTGTGGAGACGTCGCAGAAATgtgggtcgtt ... gctgccgcagTTAACGCTGGAAAGAACAAGCCTGGTGCGGCTCAGACTGTGAGCGGCAAGC
EST: gi|22073524|gb|BQ822862.1|BQ822862
EST:     GCACGGCGGCAAGGTGCAGCTGTGGAGACGTCGCAGAAAT                         TTAACGCTGGAAAGAACAAGCCTGGTGCGGCTCAGACTGTGAGCGGCAAGC
genomic: GCACGGCGGCAAGGTGCAGCTGTGGAGACGTCGCAGAAATgtgggtcgtt ... gctgccgcagTTAACGCTGGAAAGAACAAGCCTGGTGCGGCTCAGACTGTGAGCGGCAAGC
EST: gi|14237426|gb|BG856242.1|BG856242
EST:     GCACGGCGGCAAGGTGCAGCTGTGGAGACGTCGCAGAAAT                         TTAACGCTGGAAAGAACAAGCCTGGTGCGGCTCAGACTGTGAGCGGCAAGC
genomic: GCACGGCGGCAAGGTGCAGCTGTGGAGACGTCGCAGAAATgtgggtcgtt ... gctgccgcagTTAACGCTGGAAAGAACAAGCCTGGTGCGGCTCAGACTGTGAGCGGCAAGC
EST: gi|10771442|gb|AV622265.1|AV622265
EST:     GCACGGCGGCAAGGTGCAGCTGTGGAGACGTCGCAGAAAT                         TTAACGCTGGAAAGAACAAGCCTGGTGCGGCTCAGACTGTGAGCGGCAAGC
genomic: GCACGGCGGCAAGGTGCAGCTGTGGAGACGTCGCAGAAATgtgggtcgtt ... gctgccgcagTTAACGCTGGAAAGAACAAGCCTGGTGCGGCTCAGACTGTGAGCGGCAAGC
EST: gi|22054816|gb|BQ811537.1|BQ811537
EST:     GCACGGCGGCAAGGTGCAGCTGTGGAGACGTCGCAGAAAT                         TTAACGCTGGAAAGAACAAGCCTGGTGCGGCTCAGACTGTGAGCGGCAAGC
genomic: GCACGGCGGCAAGGTGCAGCTGTGGAGACGTCGCAGAAATgtgggtcgtt ... gctgccgcagTTAACGCTGGAAAGAACAAGCCTGGTGCGGCTCAGACTGTGAGCGGCAAGC
EST: gi|49464081|gb|BP091994.1|BP091994
EST:     GCACGGTGGCAAGGTGCAGCTGTGGAGACGTCGCAGAAAT                         TTAACTGCTGGAAAGAACAAGCCTGGTGCTGGCTCAGACTGTGAGCTGGCA
genomic: GCACGGCGGCAAGGTGCAGCTGTGGAGACGTCGCAGAAATgtgggtcgtt ... gctgccgcagTTAAC-GCTGGAAAGAACAAGCCTGGTGC-GGCTCAGACTGTGAGC-GGCA
EST: gi|14230368|gb|BG849184.1|BG849184
EST:     GCACGGCGGCAAGGTGCAGCTGTGGAGACGTCGCAGAAAT                         TTAACGCTGGAAAGAACAAGCCTGGTGCGGCTCAGACTGTGAGCGGCAAGC
genomic: GCACGGCGGCAAGGTGCAGCTGTGGAGACGTCGCAGAAATgtgggtcgtt ... gctgccgcagTTAACGCTGGAAAGAACAAGCCTGGTGCGGCTCAGACTGTGAGCGGCAAGC
EST: gi|10779492|gb|AV636172.1|AV636172
EST:     GCACGGCGGCAAGGTGCAGCTGTGGAGAC-TGGGCAGAAAT                         TTAACGCTGGAAAGAACAAGCCTGGTGCGGCTCAGACTGTGAGCGGCAAG
genomic: GCACGGCGGCAAGGTGCAGCTGTGGAGACGTCG-CAGAAATgtgggtcgtt ... gctgccgcagTTAACGCTGGAAAGAACAAGCCTGGTGCGGCTCAGACTGTGAGCGGCAAG
EST: gi|10774073|gb|AV624896.1|AV624896
EST:     GCACGGCGGCAAGGTGCAGCTGTGGAGACGTCGCAGAAAT                         TTAACGCTGGAAAGAACAAGCCTGGTGCGGCTCAGACTGTGAGCGGCAAGC
genomic: GCACGGCGGCAAGGTGCAGCTGTGGAGACGTCGCAGAAATgtgggtcgtt ... gctgccgcagTTAACGCTGGAAAGAACAAGCCTGGTGCGGCTCAGACTGTGAGCGGCAAGC
EST: gi|10789616|gb|AV626981.1|AV626981
EST:     GCACGGCGGCAAGGTGCAGCTGTGGAGACGTCGCAGAAAT                         TTAACGCTGGAAAGAACAAGCCTGGTGCGGCTCAGACTGTGAGCGGCAAGC
genomic: GCACGGCGGCAAGGTGCAGCTGTGGAGACGTCGCAGAAATgtgggtcgtt ... gctgccgcagTTAACGCTGGAAAGAACAAGCCTGGTGCGGCTCAGACTGTGAGCGGCAAGC
EST: gi|22058706|gb|BQ813076.1|BQ813076
EST:     GCACGGCGGCAAGGTGCAGCTGTGGAGACGTCGCAGAAAT                         TTAACGCTGGAAAGAACAAGCCTGGTGCGGCTCAGACTGTGAGCGGCAAGC
genomic: GCACGGCGGCAAGGTGCAGCTGTGGAGACGTCGCAGAAATgtgggtcgtt ... gctgccgcagTTAACGCTGGAAAGAACAAGCCTGGTGCGGCTCAGACTGTGAGCGGCAAGC
EST: gi|10793411|gb|AV630777.1|AV630777
EST:     GCACGGCGGCAAGGTGCAGCTGTGGAGACGTCGCAGAAAT                         TTAACGCTGGAAAGAACAAGCCTGGTGCGGCTCAGACTGTGAGCGGCAAGC
genomic: GCACGGCGGCAAGGTGCAGCTGTGGAGACGTCGCAGAAATgtgggtcgtt ... gctgccgcagTTAACGCTGGAAAGAACAAGCCTGGTGCGGCTCAGACTGTGAGCGGCAAGC
EST: gi|22054862|gb|BQ811558.1|BQ811558
EST:     GCACGGCGGCAAGGTGCAGCTGTGGAGACGTCGCAGAAAT                         TTAACGCTGGAAAGAACAAGCCTGGTGCGGCTCAGACTGTGAGCGGCAAGC
genomic: GCACGGCGGCAAGGTGCAGCTGTGGAGACGTCGCAGAAATgtgggtcgtt ... gctgccgcagTTAACGCTGGAAAGAACAAGCCTGGTGCGGCTCAGACTGTGAGCGGCAAGC
EST: gi|9460035|gb|BE453031.1|BE453031
EST:     GCACGGCGGCAAGGTGCAGCTGTGGAGACGTCGCAGAAAT                         TTAACGCTGGAAAGAACAAGCCTGGTGCGGCTCAGACTGTGAGCGGCAAGC
genomic: GCACGGCGGCAAGGTGCAGCTGTGGAGACGTCGCAGAAATgtgggtcgtt ... gctgccgcagTTAACGCTGGAAAGAACAAGCCTGGTGCGGCTCAGACTGTGAGCGGCAAGC
EST: gi|10768483|gb|AV619308.1|AV619308
EST:     GCACGGCGGCAAGGTGCAGCTGTGGAGACGTCGCAGAAAT                         TTAACGCTGGAAAGAACAAGCCTGGTGCGGCTCAGACTGTGAGCGGCAAGC
genomic: GCACGGCGGCAAGGTGCAGCTGTGGAGACGTCGCAGAAATgtgggtcgtt ... gctgccgcagTTAACGCTGGAAAGAACAAGCCTGGTGCGGCTCAGACTGTGAGCGGCAAGC
EST: gi|22068291|gb|BQ818230.1|BQ818230
EST:     GCACGGCGGCAAGGTGCAGCTGTGGAGACGTCGCAGAAAT                         TTAACGCTGGAAAGAACAAGCCTGGTGCGGCTCAGACTGTGAGCGGCAAGC
genomic: GCACGGCGGCAAGGTGCAGCTGTGGAGACGTCGCAGAAATgtgggtcgtt ... gctgccgcagTTAACGCTGGAAAGAACAAGCCTGGTGCGGCTCAGACTGTGAGCGGCAAGC
EST: gi|6546860|gb|AV392644.1|AV392644
EST:     GCACGGCGGCAAGGTGCAGCTGTGGAGACGTCGCAGAAAT                         TTAACGCTGGAAAGAACAAGCCTGGTGCGGCTCAGACTGTGAGCGGCAAGC
genomic: GCACGGCGGCAAGGTGCAGCTGTGGAGACGTCGCAGAAATgtgggtcgtt ... gctgccgcagTTAACGCTGGAAAGAACAAGCCTGGTGCGGCTCAGACTGTGAGCGGCAAGC
EST: gi|49463369|gb|BP091282.1|BP091282
EST:     GCACGGCGGCAAGGTGCAGCTGTGGAGACGTCGCAGAAAT                         TTAACGCTGGAAAGAACAAGCCTGGTGCGGCTCAGACTGTGAGCGGCAAGC
genomic: GCACGGCGGCAAGGTGCAGCTGTGGAGACGTCGCAGAAATgtgggtcgtt ... gctgccgcagTTAACGCTGGAAAGAACAAGCCTGGTGCGGCTCAGACTGTGAGCGGCAAGC
EST: gi|22073209|gb|BQ822547.1|BQ822547
EST:     GCACGGCGGCAAGGTGCAGCTGTGGAGACGTCGCAGAAAT                         TTAACGCTGGAAAGAAC
genomic: GCACGGCGGCAAGGTGCAGCTGTGGAGACGTCGCAGAAATgtgggtcgtt ... gctgccgcagTTAACGCTGGAAAGAAC
EST: gi|15368469|gb|BI527895.1|BI527895
EST:     GCACGGCGGCAAGGTGCAGCTGTGGAGACGTCGCAGAAAT                         TTAACGCTGGAAAGAACAAGCCTGGTGCGGCTCAGACTGTGAGCGGCAAGC
genomic: GCACGGCGGCAAGGTGCAGCTGTGGAGACGTCGCAGAAATgtgggtcgtt ... gctgccgcagTTAACGCTGGAAAGAACAAGCCTGGTGCGGCTCAGACTGTGAGCGGCAAGC
EST: gi|22061490|gb|BQ814287.1|BQ814287
EST:     GCACGGCGGCAAGGTGCAGCTGTGGAGACGTCGCAGAAAT                         TTAACGCTGGAAAGAACAAGCCTGGTGCGGCTCAGACTGTGAGCGGCAAGC
genomic: GCACGGCGGCAAGGTGCAGCTGTGGAGACGTCGCAGAAATgtgggtcgtt ... gctgccgcagTTAACGCTGGAAAGAACAAGCCTGGTGCGGCTCAGACTGTGAGCGGCAAGC
EST: gi|49462653|gb|BP090566.1|BP090566
EST:     GCACGGCGGCAAGGTGCAGCTGTGGAGACGTCGCAGAAAT                         TTAACGCTGGAAAGAACAAGCCTGGTGCGGCTCAGACTGTGAGCGGCAAGC
genomic: GCACGGCGGCAAGGTGCAGCTGTGGAGACGTCGCAGAAATgtgggtcgtt ... gctgccgcagTTAACGCTGGAAAGAACAAGCCTGGTGCGGCTCAGACTGTGAGCGGCAAGC
EST: gi|49462549|gb|BP090462.1|BP090462
EST:     GCACGGCGGCAAGGTGCAGCTGTGGAGACGTCGCAGAAAT                         TTAACGCTGGAAAGAACAAGCCTGGTGCGGCTCAGACTGTGAGCGGCAAGC
genomic: GCACGGCGGCAAGGTGCAGCTGTGGAGACGTCGCAGAAATgtgggtcgtt ... gctgccgcagTTAACGCTGGAAAGAACAAGCCTGGTGCGGCTCAGACTGTGAGCGGCAAGC
EST: gi|14234820|gb|BG853636.1|BG853636
EST:     GCACGGCGGCAAGGTGCAGCTGTGGAGACGTCGCAGAAAT                         TTAACGCTGGAAAGAACAAGCCTGGTGCGGCTCAGACTGTGAGCGGCAAGC
genomic: GCACGGCGGCAAGGTGCAGCTGTGGAGACGTCGCAGAAATgtgggtcgtt ... gctgccgcagTTAACGCTGGAAAGAACAAGCCTGGTGCGGCTCAGACTGTGAGCGGCAAGC
EST: gi|49464364|gb|BP092277.1|BP092277
EST:     GCACGGCGGCAAGGTGCAGCTGTGGAGACGTCGCAGAAAT                         TTAACGCTGGAAAGAACAAGCCTGGTGCGGCTCAGACTGTGAGCGGCAAGC
genomic: GCACGGCGGCAAGGTGCAGCTGTGGAGACGTCGCAGAAATgtgggtcgtt ... gctgccgcagTTAACGCTGGAAAGAACAAGCCTGGTGCGGCTCAGACTGTGAGCGGCAAGC
EST: gi|49459353|gb|BP087266.1|BP087266
EST:     GCACGGCGGCAAGGTGCAGCTGTGGAGACGTCGCAGAAAT                         TTAACGCTGGAAAGAACAAGCCTGGTGCGGCTCAGACTGTGAGCGGCAAGC
genomic: GCACGGCGGCAAGGTGCAGCTGTGGAGACGTCGCAGAAATgtgggtcgtt ... gctgccgcagTTAACGCTGGAAAGAACAAGCCTGGTGCGGCTCAGACTGTGAGCGGCAAGC
EST: gi|49458786|gb|BP086699.1|BP086699
EST:     GCACGGCGGCAAGGTGCAGCTGTGGAGACGTCGCAGAAAT                         TTAACGCTGGAAAGAACAAGCCTGGTGCGGCTCAGACTGTGAGCGGCAAGC
genomic: GCACGGCGGCAAGGTGCAGCTGTGGAGACGTCGCAGAAATgtgggtcgtt ... gctgccgcagTTAACGCTGGAAAGAACAAGCCTGGTGCGGCTCAGACTGTGAGCGGCAAGC
EST: gi|14240460|gb|BG859276.1|BG859276
EST:     GCACGGCGGCAAGGTGCAGCTGTGGAGACGTCGCAGAAAT                         TTAACGCTGGNAAAGAACAAGCCTGGTGCGGCTCAGACTGTGAGCGGCAAG
genomic: GCACGGCGGCAAGGTGCAGCTGTGGAGACGTCGCAGAAATgtgggtcgtt ... gctgccgcagTTAACGCTGG-AAAGAACAAGCCTGGTGCGGCTCAGACTGTGAGCGGCAAG
EST: gi|22069541|gb|BQ819108.1|BQ819108
EST:     GCACGGCGGCAAGGTGCAGCTGTGGAGACGTCGCAGAAAT                         TTAACGCTGGAAAGAACAAGCCTGGTGCGGCTCAGACTGTGAGCGGCAAGC
genomic: GCACGGCGGCAAGGTGCAGCTGTGGAGACGTCGCAGAAATgtgggtcgtt ... gctgccgcagTTAACGCTGGAAAGAACAAGCCTGGTGCGGCTCAGACTGTGAGCGGCAAGC
EST: gi|10771832|gb|AV622655.1|AV622655
EST:     GCACGGCGGCAAGGTGCAGCTGTGGAGACGTCGCAGAAAT                         TTAACGCTGGAAAGAACAAGCCTGGTGCGGCTCAGACTGTGAGCGGCAAGC
genomic: GCACGGCGGCAAGGTGCAGCTGTGGAGACGTCGCAGAAATgtgggtcgtt ... gctgccgcagTTAACGCTGGAAAGAACAAGCCTGGTGCGGCTCAGACTGTGAGCGGCAAGC
EST: gi|49458226|gb|BP086139.1|BP086139
EST:     GCACGGCGGCAAGGTGCAGCTGTGGAGACGTCGCAGAAAT                         TTAACGCTGGAAAGAACAAGCCTGGTGCGGCTCAGACTGTGAGCGGCAAGC
genomic: GCACGGCGGCAAGGTGCAGCTGTGGAGACGTCGCAGAAATgtgggtcgtt ... gctgccgcagTTAACGCTGGAAAGAACAAGCCTGGTGCGGCTCAGACTGTGAGCGGCAAGC
EST: gi|6544005|gb|AV389789.1|AV389789
EST:     GCACGGCGGCAAGGTGCAGCTGTGGAGACGTCGCAGAAAT                         TTAACGCTGGAAAGAACAAGCCTGGTGCGGCTCAGACTGTGAGCGGCAAGC
genomic: GCACGGCGGCAAGGTGCAGCTGTGGAGACGTCGCAGAAATgtgggtcgtt ... gctgccgcagTTAACGCTGGAAAGAACAAGCCTGGTGCGGCTCAGACTGTGAGCGGCAAGC
EST: gi|10791438|gb|AV628804.1|AV628804
EST:     GCACGGCGGCAAGGTGCAGCTGTGGAGACGTCGCAGAAAT                         TTAACGCTGGAAAGAACAAGCCTGGTGCGGCTCAGACTGTGAGCGGCAAGC
genomic: GCACGGCGGCAAGGTGCAGCTGTGGAGACGTCGCAGAAATgtgggtcgtt ... gctgccgcagTTAACGCTGGAAAGAACAAGCCTGGTGCGGCTCAGACTGTGAGCGGCAAGC
EST: gi|14238923|gb|BG857739.1|BG857739
EST:     GCACGGCGGCAAGGTGCAGCTGTGGAGACGTCGCAGAAAT                         TTAACGCTGGAAAGAACAAGCCTGGTGCGGCTCAGACTGTGAGCGGCAAGC
genomic: GCACGGCGGCAAGGTGCAGCTGTGGAGACGTCGCAGAAATgtgggtcgtt ... gctgccgcagTTAACGCTGGAAAGAACAAGCCTGGTGCGGCTCAGACTGTGAGCGGCAAGC
EST: gi|49459305|gb|BP087218.1|BP087218
EST:     GCACGGCGGCAAGGTGCAGCTGTGGAGACGTCGCAGAAAT                         TTAACGCTGGAAAGAACAAGCCTGGTGCGGCTCAGACTGTGAGCGGCAAGC
genomic: GCACGGCGGCAAGGTGCAGCTGTGGAGACGTCGCAGAAATgtgggtcgtt ... gctgccgcagTTAACGCTGGAAAGAACAAGCCTGGTGCGGCTCAGACTGTGAGCGGCAAGC
EST: gi|22072369|gb|BQ821707.1|BQ821707
EST:     GCACGGCGGCAAGGTGCAGCTGTGGAGACGTCGCAGAAAT                         TTAACGCTGGAAAGAACAAGCCTGGTGCGGCTCAGACTGTGAGCGGCAAGC
genomic: GCACGGCGGCAAGGTGCAGCTGTGGAGACGTCGCAGAAATgtgggtcgtt ... gctgccgcagTTAACGCTGGAAAGAACAAGCCTGGTGCGGCTCAGACTGTGAGCGGCAAGC
EST: gi|49459607|gb|BP087520.1|BP087520
EST:     GGCACGGCGGCAAGGTGCAGCTGTGGAGACGTCAGCAGAAAT                         TTAACGCTGGAAAGAACAAGCCTGGTGCGGCTCAGACTGTGAGCGGCAAG
genomic: GGCACGGCGGCAAGGTGCAGCTGTGGAGACGTC-GCAGAAATgtgggtcgtt ... gctgccgcagTTAACGCTGGAAAGAACAAGCCTGGTGCGGCTCAGACTGTGAGCGGCAAG
EST: gi|22062921|gb|BQ815004.1|BQ815004
EST:     GCACGGCGGCAAGGTGCAGCTGTGGAGACGTCGCAGAAAT                         TTAACGCTGGAAAGAACAAGCCTGGTGCGGCTCAGACTGTGAGCGGCAAGC
genomic: GCACGGCGGCAAGGTGCAGCTGTGGAGACGTCGCAGAAATgtgggtcgtt ... gctgccgcagTTAACGCTGGAAAGAACAAGCCTGGTGCGGCTCAGACTGTGAGCGGCAAGC
EST: gi|49458703|gb|BP086616.1|BP086616
EST:     GCACGGCGGCAAGGTGCAGCTGTGGAGACGTCGCAGAAAT                         TTAACGCTGGAAAGAACAAGCCTGGTGCGGCTCAGACTGTGAGCGGCAAGC
genomic: GCACGGCGGCAAGGTGCAGCTGTGGAGACGTCGCAGAAATgtgggtcgtt ... gctgccgcagTTAACGCTGGAAAGAACAAGCCTGGTGCGGCTCAGACTGTGAGCGGCAAGC
EST: gi|49462920|gb|BP090833.1|BP090833
EST:     GCACGGCGGCAAGGTGCAGCTGTGGAGACGTCGCAGAAAT                         TTAACGCTGGAAAGAACAAGCCTGGTGCGGCTCAGACTGTGAGCGGCAAGC
genomic: GCACGGCGGCAAGGTGCAGCTGTGGAGACGTCGCAGAAATgtgggtcgtt ... gctgccgcagTTAACGCTGGAAAGAACAAGCCTGGTGCGGCTCAGACTGTGAGCGGCAAGC
EST: gi|10778538|gb|AV635218.1|AV635218
EST:     GCACGGCGGCAAGGTGCAGCTGTGGAGACGTCGCAGAAAT                         TTAACGCTGGAAAGAACAAGCCTGGTGCGGCTCAGACTGTGAGCGGCAAGC
genomic: GCACGGCGGCAAGGTGCAGCTGTGGAGACGTCGCAGAAATgtgggtcgtt ... gctgccgcagTTAACGCTGGAAAGAACAAGCCTGGTGCGGCTCAGACTGTGAGCGGCAAGC
EST: gi|22075787|gb|BQ824563.1|BQ824563
EST:     GCACGGCGGCAAGGTGCAGCTGTGGAGACGTCGCAGAAAT                         TTAACGCTGGAAAGAACAAGCCTGGTGCGGCTCAGACTGTGAGCGGCAAGC
genomic: GCACGGCGGCAAGGTGCAGCTGTGGAGACGTCGCAGAAATgtgggtcgtt ... gctgccgcagTTAACGCTGGAAAGAACAAGCCTGGTGCGGCTCAGACTGTGAGCGGCAAGC
EST: gi|16072973|gb|BI874969.1|BI874969
EST:     GCACGGCGGCAAGGTGCAGCTGTGGAGACGTCGCAGAAAT                         TTAACGCTGGAAAGAACAAGCCTGGTGCGGCTCAGACTGTGAGCGGCAAGC
genomic: GCACGGCGGCAAGGTGCAGCTGTGGAGACGTCGCAGAAATgtgggtcgtt ... gctgccgcagTTAACGCTGGAAAGAACAAGCCTGGTGCGGCTCAGACTGTGAGCGGCAAGC
EST: gi|49461876|gb|BP089789.1|BP089789
EST:     GCACGGCGGCAAGGTGCAGCTGTGGAGACGTCGCAGAAAT                         TTAACGCTGGAAAGAACAAGCCTGGTGCGGCTCAGACTGTGAGCGGCAAGC
genomic: GCACGGCGGCAAGGTGCAGCTGTGGAGACGTCGCAGAAATgtgggtcgtt ... gctgccgcagTTAACGCTGGAAAGAACAAGCCTGGTGCGGCTCAGACTGTGAGCGGCAAGC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgtggatctgccgctcagcacatactgagattacctacgcgttttgctgccgcagTTAACGCTGGAAAGAACAAGCCTGGTGCGGCTCAGACTGTGAGCGGCAAGCCTGCAGCCAAGCTGGAGCAGGAGACGGAGGACTTCCATC
                                         ttttgct  CT-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtgggtcgttctggcgaagcgtcttctaggccgccagggtgtggatctgccgctcagcacatactgagattacctacgcgttttgctgccgcagTTAACGCTGGAAAGAACAAGCCTGGTGCGGCTCAGACTGTGAGCGGCAAGCCTGCAGCCAAGCTGGAGCAGGAGACGGAGGACTTCCATC

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  CTGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GCTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GAGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA