1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
...ctgctgcaagttgggagtgccagtcattgtgggtttagcctcccgcggcgaggctgacgtgcacatgccgtggtcaacctcacctccaccgcccgcgcagGGCGCCCCCAAGCTCAAGGTGGCGATTGTGGGCGGTGGCCTGGCGGGTCTGTCCACGGCCGTGGAGCTGCTGGACCAGGG
species | Chlamydomonas reinhardtii |
transcript | EDP07040 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: ACGTGCCTCTGCGGTCGCTGTTCCCTGATGAGCCCAAGCCACCCGCCCCG GGCGCCCCCAAGCTCAAGGTGGCGATTGTGGGCGGTGGCCTGGCGGGTCTGEST: gi|10791803|gb|AV629169.1|AV629169
genomic: ACGTGCCTCTGCGGTCGCTGTTCCCTGATGAGCCCAAGCCACCCGCCCCGgtgcgtaatt ... gcccgcgcagGGCGCCCCCAAGCTCAAGGTGGCGATTGTGGGCGGTGGCCTGGCGGGTCTG
EST: ACGTGCCTCTGCGGTCGCTGTTCCCTGATGAGCCCAAGCCACCCGCCCCG GGCGCCCCCAAGCTCAAGGTGGCGATTGTGGGCGGTGGCCTGGCGGGTCTGEST: gi|15699188|gb|BI723493.1|BI723493
genomic: ACGTGCCTCTGCGGTCGCTGTTCCCTGATGAGCCCAAGCCACCCGCCCCGgtgcgtaatt ... gcccgcgcagGGCGCCCCCAAGCTCAAGGTGGCGATTGTGGGCGGTGGCCTGGCGGGTCTG
EST: ACGTGCCTCTGCGGTCGCTGTTCCCTGATGAGCCCAAGCCACCCGCCCCG GGCGCCCCCAAGCTCAAGGTGGCGATTGTGGGCGGTGGCCTGGCGGGTCTGEST: gi|49467273|gb|BP095186.1|BP095186
genomic: ACGTGCCTCTGCGGTCGCTGTTCCCTGATGAGCCCAAGCCACCCGCCCCGgtgcgtaatt ... gcccgcgcagGGCGCCCCCAAGCTCAAGGTGGCGATTGTGGGCGGTGGCCTGGCGGGTCTG
EST: ACGTGCCTCTGCGGTCGCTGTTCCCTGATGAGCCCAAGCCACCCGCCCCG GGCGCCCCCAAGCTCAAGGTGGCGATTGTGGGCGGTGGCCTGGCGGGTCTGEST: gi|15699186|gb|BI723491.1|BI723491
genomic: ACGTGCCTCTGCGGTCGCTGTTCCCTGATGAGCCCAAGCCACCCGCCCCGgtgcgtaatt ... gcccgcgcagGGCGCCCCCAAGCTCAAGGTGGCGATTGTGGGCGGTGGCCTGGCGGGTCTG
EST: ACGTGCCTCTGCGGTCGCTGTTCCCTGATGAGCCCAAGCCACCCGCCCCG GGCGCCCCCAAGCTCAAGGTGGCGATTGTGGGCGGTGGCCTGGCGGGTCTG
genomic: ACGTGCCTCTGCGGTCGCTGTTCCCTGATGAGCCCAAGCCACCCGCCCCGgtgcgtaatt ... gcccgcgcagGGCGCCCCCAAGCTCAAGGTGGCGATTGTGGGCGGTGGCCTGGCGGGTCTG
cggcgaggctgacgtgcacatgccgtggtcaacctcacctccaccgcccgcgcagGGCGCCCCCAAGCTCAAGGTGGCGATTGTGGGCGGTGGCCTGGCGGGTCTGTCCACGGCCGTGGAGCTGCTGGACCAGGG
acctcac putative branch site (score: 3)
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ctgctgcaagttgggagtgccagtcattgtgggtttagcctcccgcggcgaggctgacgtgcacatgccgtggtcaacctcacctccaccgcccgcgcagGGCGCCCCCAAGCTCAAGGTGGCGATTGTGGGCGGTGGCCTGGCGGGTCTGTCCACGGCCGTGGAGCTGCTGGACCAGGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA
- - - - - - - - - - cagtcat
- - - - - - - - - - - - - -tgtgggt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - acatgcc