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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtacgcttcgccatgtttcgtgaagactaattgggggatagctaggattgcacgcggctctggaagcgctgaggagatacctggtgcacgcgacgcaagcaggtgcccagtcaagttgcagcaggtgcgtgcatatgctcaaaggactgaccagagggcctatataccgcctgcccacgcagCGGCGTATGTTCCTGTCGGCTCTTGGGCCGGCGGGGCTGCAGGCGCTGCTGCCGCGGGCGCAGGCGGTGATGCAGGCACACCTGGCGCAGTGGGAGGCCG

Basic information

species Chlamydomonas reinhardtii
transcript EDP06329
intron # 2
splice site 3'
intron type U2


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cgtgcatatgctcaaaggactgaccagagggcctatataccgcctgcccacgcagCGGCGTATGTTCCTGTCGGCTCTTGGGCCGGCGGGGCTGCAGGCGCTGCTGCCGCGGGCGCAGGCGGTGATGCAGGCACACCTGGCGCAGTGGGAGGCCG
                 gactgac  putative branch site (score: 2)
                                          cctgccc  putative PPT
                                 tatata  TA-rich tract