1 5' 3' | 2 5' 3' | 3 5' 3' |
...tgcaactttcattattgtggcgtgacgctgctgtttacgcttactcaccacttttcctgccctgtccgctgcctttccttcacttttctgcggttcttagGGAGCCCGAGGAGGCCAAGGAGGCCGGCGAGGAGGAGACCTTCGAGGCGGAGGGCTACGCCCTGCCCGCCCCCGTGGGTGCCGCTGAGAACTGGGGTGAG
species | Chlamydomonas reinhardtii |
transcript | EDP06264 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: ATCAACGTGACCAACCCCTGGTCCGTCCCCGTGGACCTGTTCTTCTACAG GGAGCCCGAGGAGGCCAAGGAGGCCGGCGAGGAGGAGACCTTCGAGGCGGAEST: gi|16072338|gb|BI874334.1|BI874334
genomic: ATCAACGTGACCAACCCCTGGTCCGTCCCCGTGGACCTGTTCTTCTACAGgtgcgctcgc ... cggttcttagGGAGCCCGAGGAGGCCAAGGAGGCCGGCGAGGAGGAGACCTTCGAGGCGGA
EST: ATCAACGTGACCAACCCCTGGTCCGTCCCCGTGGACCTGTTCTTCTACAG GGAGCCCGAGGAGGCCAAGGAGGCCGGCGAGGAGGAGACCTTCGAGGCGGAEST: gi|15369510|gb|BI528936.1|BI528936
genomic: ATCAACGTGACCAACCCCTGGTCCGTCCCCGTGGACCTGTTCTTCTACAGgtgcgctcgc ... cggttcttagGGAGCCCGAGGAGGCCAAGGAGGCCGGCGAGGAGGAGACCTTCGAGGCGGA
EST: ATCAACGTGACCAACCCCTGGTCCGTCCCCGTGGACCTGTTCTTCTACAG GGAGCCCGAGGAGGCCAAGGAGGCCGGCGAGGAGGAGACCTTCGAGGCGGAEST: gi|10778959|gb|AV635639.1|AV635639
genomic: ATCAACGTGACCAACCCCTGGTCCGTCCCCGTGGACCTGTTCTTCTACAGgtgcgctcgc ... cggttcttagGGAGCCCGAGGAGGCCAAGGAGGCCGGCGAGGAGGAGACCTTCGAGGCGGA
EST: ATCAACGTGACCAACCCCTGGTCCGTCCCCGTGGACCTGTTCTTCTACAG GGAGCCCGAGGAGGCCAAGGAGGCCGGCGAGGAGGEST: gi|7687333|gb|AW757981.1|AW757981
genomic: ATCAACGTGACCAACCCCTGGTCCGTCCCCGTGGACCTGTTCTTCTACAGgtgcgctcgc ... cggttcttagGGAGCCCGAGGAGGCCAAGGAGGCCGGCGAGGAGG
EST: ATCAACGTGACCAACCCCTGGTCCGTCCCCGTGGACCTGTTCTTCTACAG GGAGCCCGAGGAGGCCAAGGAGEST: gi|6541255|gb|AV387039.1|AV387039
genomic: ATCAACGTGACCAACCCCTGGTCCGTCCCCGTGGACCTGTTCTTCTACAGgtgcgctcgc ... cggttcttagGGAGCCCGAGGAGGCCAAGGAG
EST: ATCAACGTGACCAACCCCTGGTCCGTCCCCGTGGACCTGTTCTTCTACAG GGAGCCCGAGGAEST: gi|161800463|gb|FC083644.1|FC083644
genomic: ATCAACGTGACCAACCCCTGGTCCGTCCCCGTGGACCTGTTCTTCTACAGgtgcgctcgc ... cggttcttagGGAGCCCGAGGA
EST: ATCAACGTGACCAACCCCTGGTCCGTCCCCGTGGACCTGTTCTTCTACAG GGAGCCCGAGGAGGCCAAGGAGGCCGGCGAGGAGGAGACCTTCGAGGCGGAEST: gi|161792204|gb|FC077545.1|FC077545
genomic: ATCAACGTGACCAACCCCTGGTCCGTCCCCGTGGACCTGTTCTTCTACAGgtgcgctcgc ... cggttcttagGGAGCCCGAGGAGGCCAAGGAGGCCGGCGAGGAGGAGACCTTCGAGGCGGA
EST: ATCAACGTGACCAACCCCTGGTCCGTCCCCGTGGACCTGTTCTTCTACAG GGAGCCCGAGGAGGCCAAGGAGGCCGGCGAGGAGGAGACCTTCGAGGCEST: gi|34988741|gb|CF562658.1|CF562658
genomic: ATCAACGTGACCAACCCCTGGTCCGTCCCCGTGGACCTGTTCTTCTACAGgtgcgctcgc ... cggttcttagGGAGCCCGAGGAGGCCAAGGAGGCCGGCGAGGAGGAGACCTTCGAGGC
EST: ATCAACGTGACCAACCCCTGGTCCGTCCCCGTGGACCTGTTCTTCTACAG GGAGCCCGACGAGGCCAAGGAGGCCGEST: gi|15372809|gb|BI532235.1|BI532235
genomic: ATCAACGTGACCAACCCCTGGTCCGTCCCCGTGGACCTGTTCTTCTACAGgtgcgctcgc ... cggttcttagGGAGCCCGAGGAGGCCAAGGAGGCCG
EST: ATCAACGTGACCAACCCCTGGTCCGTCCCCGTGGACCTGTTCTTCTACAG GGAGCCCGAGGAGGCCAAGGAGGCCGGCGAGGAEST: gi|34994107|gb|CF568024.1|CF568024
genomic: ATCAACGTGACCAACCCCTGGTCCGTCCCCGTGGACCTGTTCTTCTACAGgtgcgctcgc ... cggttcttagGGAGCCCGAGGAGGCCAAGGAGGCCGGCGAGGA
EST: ATCAACGTGACCAACCCCTGGTCCGTCCCCGTGGACCTGTTCTTCTACAG GGAGCCCGAGGAGGCCAAGGAGGCCGGCGAGGAGGAGACCTTCGAGGCGGAEST: gi|14228070|gb|BG846886.1|BG846886
genomic: ATCAACGTGACCAACCCCTGGTCCGTCCCCGTGGACCTGTTCTTCTACAGgtgcgctcgc ... cggttcttagGGAGCCCGAGGAGGCCAAGGAGGCCGGCGAGGAGGAGACCTTCGAGGCGGA
EST: ATCAACGTGACCAACCCCTGGTCCGTCCCCGTGGACCTGTTCTTCTACAG GGAGCCCGAGGAGGCCAAGGAGGCCGGCGAGGAGGAGACCTTCGAGGCGGAEST: gi|22070278|gb|BQ819675.1|BQ819675
genomic: ATCAACGTGACCAACCCCTGGTCCGTCCCCGTGGACCTGTTCTTCTACAGgtgcgctcgc ... cggttcttagGGAGCCCGAGGAGGCCAAGGAGGCCGGCGAGGAGGAGACCTTCGAGGCGGA
EST: ATCAACGTGACCAACCCCTGGTCCGTCCCCGTGGACCTGTTCTTCTACAG GGAGCCCGAGGAGGCCAAGGAGGCCGGCGAGGAGGAGACCTTCGAGGCGGAEST: gi|34989159|gb|CF563076.1|CF563076
genomic: ATCAACGTGACCAACCCCTGGTCCGTCCCCGTGGACCTGTTCTTCTACAGgtgcgctcgc ... cggttcttagGGAGCCCGAGGAGGCCAAGGAGGCCGGCGAGGAGGAGACCTTCGAGGCGGA
EST: ATCAACGTGACCAACCCCTGGTCCGTCCCCGTGGACCTGTTCTTCTACAG GAAGCCCGAGGAGG
genomic: ATCAACGTGACCAACCCCTGGTCCGTCCCCGTGGACCTGTTCTTCTACAGgtgcgctcgc ... cggttcttagGGAGCCCGAGGAGG
caccacttttcctgccctgtccgctgcctttccttcacttttctgcggttcttagGGAGCCCGAGGAGGCCAAGGAGGCCGGCGAGGAGGAGACCTTCGAGGCGGAGGGCTACGCCCTGCCCGCCCCCGTGGGTGCCGCTGAGAACTGGGGTGAG
tactcac putative branch site (score: 1)
tccgctgcctttcctt putative PPT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tgcaactttcattattgtggcgtgacgctgctgtttacgcttactcaccacttttcctgccctgtccgctgcctttccttcacttttctgcggttcttagGGAGCCCGAGGAGGCCAAGGAGGCCGGCGAGGAGGAGACCTTCGAGGCGGAGGGCTACGCCCTGCCCGCCCCCGTGGGTGCCGCTGAGAACTGGGGTGAG
- - actttca
- - - - - -ttattgt
- - - - - - - - - - - - - - - -tgtttac
- - - - - - - - - - - - - - - - - - - - ttactca