1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
gtgtgcaaagcatcctgcttggactgaggaggctcttgagctaacgggggcgctgtcgcttgcagATTCAAATGCGCGTAGACGAGCAATGCAAGGTGCTCTGTCGCATTGAGTCCCTGAGCAGCGCTCAGGCGAAGGCCTTCCGCGCCAAGGTGGAGGATGACT
species | Chlamydomonas reinhardtii |
transcript | EDP05803 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: ACCTGGGCGAGGTGTTGCGTGGGGACCGCATCGAGAACTCGCTCTACCAG ATTCAAATGCGCGTAGACGAGCAATGCAAGGTGCTCTGTCGCATTGAGTCCEST: gi|10783391|gb|AV640063.1|AV640063
genomic: ACCTGGGCGAGGTGTTGCGTGGGGACCGCATCGAGAACTCGCTCTACCAGgtgtgcaaag ... tcgcttgcagATTCAAATGCGCGTAGACGAGCAATGCAAGGTGCTCTGTCGCATTGAGTCC
EST: ACCTGGGCGAGGTGTTGCGTGGGGACCGCATCGAGAACTCGCTCTACCAG ATTCAAATGCGCGTAGACGAGCAATGCAAGGTGCTCTGTCGCATTGAGTCCEST: gi|49469214|gb|BP097075.1|BP097075
genomic: ACCTGGGCGAGGTGTTGCGTGGGGACCGCATCGAGAACTCGCTCTACCAGgtgtgcaaag ... tcgcttgcagATTCAAATGCGCGTAGACGAGCAATGCAAGGTGCTCTGTCGCATTGAGTCC
EST: ACCTGGGCGAGGTGTTGCGTGGGGACCGCATCGAGAACTCGCTCTACCAG ATTCAAATGCGCGTAGACGAGCAATGCAAGGTGCTCTGTCGCATTGAGTCCEST: gi|10789138|gb|AV626858.1|AV626858
genomic: ACCTGGGCGAGGTGTTGCGTGGGGACCGCATCGAGAACTCGCTCTACCAGgtgtgcaaag ... tcgcttgcagATTCAAATGCGCGTAGACGAGCAATGCAAGGTGCTCTGTCGCATTGAGTCC
EST: ACCTGNGCGAGGTGT-GCGTGGGGACCGCATCGAGAACTCGCTCTACCAG ATTCAAATGCGCGTAEST: gi|16438403|gb|BM003623.1|BM003623
genomic: ACCTGGGCGAGGTGTTGCGTGGGGACCGCATCGAGAACTCGCTCTACCAGgtgtgcaaag ... tcgcttgcagATTCAAATGCGCGTA
EST: ACCTGGGCGAGGTGTTGCGTGGGGACCGCATCGAGAACTCGCTCTACCAG ATTCAAATGCCGCGTAGACGAGCAATGCAAGGTGCTCTGTCGCATTGAGTC
genomic: ACCTGGGCGAGGTGTTGCGTGGGGACCGCATCGAGAACTCGCTCTACCAGgtgtgcaaag ... tcgcttgcagATTCAAATGC-GCGTAGACGAGCAATGCAAGGTGCTCTGTCGCATTGAGTC
catcctgcttggactgaggaggctcttgagctaacgggggcgctgtcgcttgcagATTCAAATGCGCGTAGACGAGCAATGCAAGGTGCTCTGTCGCATTGAGTCCCTGAGCAGCGCTCAGGCGAAGGCCTTCCGCGCCAAGGTGGAGGATGACT
agctaac putative branch site (score: 2)
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgtgcaaagcatcctgcttggactgaggaggctcttgagctaacgggggcgctgtcgcttgcagATTCAAATGCGCGTAGACGAGCAATGCAAGGTGCTCTGTCGCATTGAGTCCCTGAGCAGCGCTCAGGCGAAGGCCTTCCGCGCCAAGGTGGAGGATGACT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG