1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...atgtcaatttgctgctaccgacatgccggagagcttattgtgtgtcgttttgttgctgcaaatgttgcttacgtggctacacctgaccggctggctgcagACCATGTGCGACCCCTCCATGACCTGCTTTGAGCCGGAGGCG
species | Chlamydomonas reinhardtii |
transcript | EDP05729 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: ACCAGGAGCTGCTCACCGCCATTGCGGCGGGTAACTATGAGAAGTATGTG ACCATGTGCGACCCCTCCATGACCTGCTTTGAGCCGGAGGCGEST: gi|22071562|gb|BQ820900.1|BQ820900
genomic: ACCAGGAGCTGCTCACCGCCATTGCGGCGGGTAACTATGAGAAGTATGCGgtgagctgga ... ctggctgcagACCATGTGCGACCCCTCCATGACCTGCTTTGAGCCGGAGGCG
EST: GGCGGGTAACTATGAGAAGTATGCG ACCATGTGCGACCCCTCCATGACCTGCTTTGAGCCGGAGGCGEST: gi|22057319|gb|BQ812574.1|BQ812574
genomic: GGCGGGTAACTATGAGAAGTATGCGgtgagctgga ... ctggctgcagACCATGTGCGACCCCTCCATGACCTGCTTTGAGCCGGAGGCG
EST: ACCAGGAGCTGCTCACCGCCATTGCGGCGGGTAACTATGAGAAGTATGCG ACCATGTGCGACCCCTCCATGACCTGCTTTGAGCCGGAGGCGEST: gi|22075208|gb|BQ823984.1|BQ823984
genomic: ACCAGGAGCTGCTCACCGCCATTGCGGCGGGTAACTATGAGAAGTATGCGgtgagctgga ... ctggctgcagACCATGTGCGACCCCTCCATGACCTGCTTTGAGCCGGAGGCG
EST: ACCAGGAGCTGCTCACCGCCATTGCGGCGGGTAACTATGAGAAGTATGCG ACCATGTGCGACCCCTCCATGACCTGCTTTGAGCCGGAGGCGEST: gi|10787440|gb|AV644112.1|AV644112
genomic: ACCAGGAGCTGCTCACCGCCATTGCGGCGGGTAACTATGAGAAGTATGCGgtgagctgga ... ctggctgcagACCATGTGCGACCCCTCCATGACCTGCTTTGAGCCGGAGGCG
EST: ACCAGGAGCTGCTCACCGCCATTGCGGCGGGTAACTATGAGAAGTATGCG ACCATGTGCGACCCCTCCATGACCTGCTTTGAGCCGGAGGCGEST: gi|22064540|gb|BQ815859.1|BQ815859
genomic: ACCAGGAGCTGCTCACCGCCATTGCGGCGGGTAACTATGAGAAGTATGCGgtgagctgga ... ctggctgcagACCATGTGCGACCCCTCCATGACCTGCTTTGAGCCGGAGGCG
EST: ACCAGNAGCTGCTCACCGCCATTGCGGCGGGTAACTATGAGAAGTATGCG ACCATGTGCGACCCCTCCATGACCTGCTTTGAGCCGGAGGCG
genomic: ACCAGGAGCTGCTCACCGCCATTGCGGCGGGTAACTATGAGAAGTATGCGgtgagctgga ... ctggctgcagACCATGTGCGACCCCTCCATGACCTGCTTTGAGCCGGAGGCG
cgttttgttgctgcaaatgttgcttacgtggctacacctgaccggctggctgcagACCATGTGCGACCCCTCCATGACCTGCTTTGAGCCGGAGGCG
aaatgtt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| atgtcaatttgctgctaccgacatgccggagagcttattgtgtgtcgttttgttgctgcaaatgttgcttacgtggctacacctgaccggctggctgcagACCATGTGCGACCCCTCCATGACCTGCTTTGAGCCGGAGGCG
- - - - - - - - - - acatgcc
- - - - - - - - - - - - - - - - - - -ttgtgtg
- - - - - - - - - - - - - - - - - - - - - - - - - tgttgct
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - acacctg