Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtagaccgggcacatgcgttctgcgggttacgcacggtcggttgcgtttccagcgtggccagcaaccccattccgcacagcatgttgctactgcacccaagtctccaatcctcttcaagcaacctactgaacgctttcttgcactctcttgtgctttggggctaccacagGCCAGTGGCGTGAGCTTGCGGTGTCGGAACAGGTGGCTCAGACCCCCGAGTTTGGCGGCGTCGGGCCAGACGGCAAGCCCCTGGCCAACCCGCCCCGCTG

Basic information

species Chlamydomonas reinhardtii
transcript EDP05716
intron # 2
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|23361683|gb|BU649503.1|BU649503
EST:     GGTGGGAGAGCGGCTGAGCCCTTGCGGCAAGTTCGCAATCAATGGAGCAG                         GCCAGTGGCGTGAGCTTGCGGTGTCGGAACAGGTGGCTCAGACCCCCGAGT
genomic: GGTGGGAGAGCGGCTGAGCCCTTGCGGCAAGTTCGCAATCAATGGAGCAGgtagaccggg ... gctaccacagGCCAGTGGCGTGAGCTTGCGGTGTCGGAACAGGTGGCTCAGACCCCCGAGT
EST: gi|14236795|gb|BG855595.1|BG855595
EST:     GGTGGGAGAGCGGCTGAGCCCTTGCGGCAAGTTCGCAATCAATGGAGCAG                         GCCAGTGGCGTGAGCTTGCGGTGTCGGAACAGGTGGCTCAGACCCCCGAGT
genomic: GGTGGGAGAGCGGCTGAGCCCTTGCGGCAAGTTCGCAATCAATGGAGCAGgtagaccggg ... gctaccacagGCCAGTGGCGTGAGCTTGCGGTGTCGGAACAGGTGGCTCAGACCCCCGAGT
EST: gi|49458893|gb|BP086806.1|BP086806
EST:     GTGGGAGAGCGGCTGAGCCCTTGGCGGCAAGTTCGCAATCAATGGAGCAG                         GCCAGTGGCGTGAGCTTGCGGTGTCGGAACAGGTGGCTCAGACCCCCGAGT
genomic: GTGGGAGAGCGGCTGAGCCCTT-GCGGCAAGTTCGCAATCAATGGAGCAGgtagaccggg ... gctaccacagGCCAGTGGCGTGAGCTTGCGGTGTCGGAACAGGTGGCTCAGACCCCCGAGT
EST: gi|18690122|gb|BM518970.1|BM518970
EST:     GTTCGCAATCAATGGAGCAG                         GCCAGTGGCGTGAGCTTGCGGTGTCGGAACAGGTGGCTCAGACCCCCGAGT
genomic: GTTCGCAATCAATGGAGCAGgtagaccggg ... gctaccacagGCCAGTGGCGTGAGCTTGCGGTGTCGGAACAGGTGGCTCAGACCCCCGAGT