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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgcgtcggcgccggtggcgcgcaagcgaaagcgtggccggcagcttctataagcaataggagggaatgcaaagaactgaaatttatggcctgcggtgcacggggtcgagtggtgcccggagctggcaatgcgcccgtgggaatcttgcttgagcgctggtattggctgtttgggtgcgcagGTGACCCAGGTGCGCGTCAAGTTCCTGGACGACCAGAACCGCCTGATCATGCGCAACGTGAAGGGCCCCGTCCGCGAGG

Basic information

species Chlamydomonas reinhardtii
transcript EDP05500
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: EDP05500 (Chlamydomonas reinhardtii), 3'ss of exon 2
lower sequence: PP1S21_362V6.1 (Physcomitrella patens), 3'ss of exon 1
gtgcgtcggcgccggtggcgcgcaagcgaaagcgtggccggcagcttctataagcaataggagg-gaatgcaaaga-actgaaatttatggcctgcggtgcacggggtcgagtggtgcccggagctggcaatgcgcccgtgggaatcttgcttgagcgctggtattggctgtttgggtgcgcagGTGACCCAGGTGCGCGTCAAGTTCCTGGACGACCAGAACCGCCTGATCATGCGCAACGTGAAGGGCCCCGTCCGCGAGG
    ||   |     | |      |        |||   |   | |||  |  ||||||   |  |  |     || | ||||   |  |   ||    |  | || |  ||  |||     ||||||| ||      ||    |   || | |  |||    | ||| |     ||   ||||||||| ||||||||||| |||||| |||| |||||||                                          
---tgttttcataattagtagaggaattctctggtg-ttgattgattccgtttgcaatatatgatgtttatgtggatattgaatgctgagatttg-atcgtgcagGATTCAGCAGTG----AAGCTGGCTAT-----TGTAATGAAGGTGATCGGACGC----ACTGGGTCCCGAGG---GCAGGTGACGCAGGTGCGCGTTAAGTTCTTGGATGACCAGA------------------------------------------

upper sequence: EDP05500 (Chlamydomonas reinhardtii), 3'ss of exon 2
lower sequence: PP1S313_15V6.1 (Physcomitrella patens), 3'ss of exon 1
gtgcgtcggcgccggtggcgcgcaagcgaaagcgtggccggcagcttctataagcaataggagggaatgcaaagaactgaaatttatggcctgcggtgcacggggtcgagtggtgcccggagctggcaatgcgcccgtgggaatcttgcttgagcgctggtattggctgtttgggtgcgcagGTGACCCAGGTGCGCGTCAAGTTCCTGGACGACCAGAACCGCCTGATCATGCGCAACGTGAAGGGCCCCGTCCGCGAGG
   | |     |  | ||  |   ||     || |   ||     ||          |       |   |     |||||  |||| ||  |    |   | || |   |  |||     || |||| ||      |||   |   |  ||| ||||    | ||| |     ||    |||||||| |||||||||||||||||| |||| || ||||                                          
-gactttaaatcacgaggttca-gagaacttgctttatcgttgaatttggagtctggtgaagtctacctcgcgagactgag-tttagggattcgattttgcagGATACCGCCGTG----AAGTTGGCTAT-----TGTGATGAAGGTCATTGGGCGC----ACTGGGTCCCGAGG---ACAGGTGACGCAGGTGCGCGTCAAGTTCTTGGATGATCAGA------------------------------------------

upper sequence: EDP05500 (Chlamydomonas reinhardtii), 3'ss of exon 2
lower sequence: PP1S34_107V6.1 (Physcomitrella patens), 3'ss of exon 1
gtgcgtcggcgccggtggcgcgcaagcgaaagcgtggccggcagcttctataagcaataggagggaatgcaaagaactgaaatttatggcctgcggtgcacggggtcgagtggtgcc-cggagctggcaatgcgcccgtgggaatcttgcttgagcgctggtattggctgtttgggtgcgcagGTGACCCAGGTGCGCGTCAAGTTCCTGGACGACCAGAACCGCCTGATCATGCGCAACGTGAAGGGCCCCGTCCGCGAGG
  |  |         |||   |       ||   |         |   | || |     ||        |||   |||||   ||| |   | || |    || |  |  |   |||  | || |||| ||      |||   |   || | | |||    || ||| |     |||   |||||||||||||||||||| |||||| |||| |||||||                                          
--gttttatttttcttggattgtttttttaattatttatctttacgcgtctagggttctgggattttgacaagatactgag--ttacgatattcgat----ggtgcagGATACCGCCGTGAAGTTGGCTAT-----TGTGATGAAGGTGATCGGGCG----TACTGGGTCCCGAGGT---CAGGTGACCCAGGTGCGCGTTAAGTTCTTGGATGACCAGA------------------------------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|34988161|gb|CF562078.1|CF562078
EST:     AGCTCGCTATTGTCATGAAGGTCATCGGCCGCACTGGCTCGCGTGGCCAG                         GTGACCCAGGTGCGCGTCAAGTTCCTGGACGACCAGAACCGCCTGATCATG
genomic: AGCTCGCTATTGTCATGAAGGTCATCGGCCGCACTGGCTCGCGTGGCCAGgtgcgtcggc ... gggtgcgcagGTGACCCAGGTGCGCGTCAAGTTCCTGGACGACCAGAACCGCCTGATCATG
EST: gi|34988803|gb|CF562720.1|CF562720
EST:     AGCTCGCTATTGTCATGAAGGTCATCGGCCGCACTGGCTCGCGTGGCCAG                         GTGACCCAGGTGCGCGTCAAGTTCCTGGACGACCAGAACCGCCTGATCATG
genomic: AGCTCGCTATTGTCATGAAGGTCATCGGCCGCACTGGCTCGCGTGGCCAGgtgcgtcggc ... gggtgcgcagGTGACCCAGGTGCGCGTCAAGTTCCTGGACGACCAGAACCGCCTGATCATG
EST: gi|34993857|gb|CF567774.1|CF567774
EST:     AGCTCGCTATTGTCATGAAGGTCATCGGCCGCACTGGCTCGCGTGGCCAG                         GTGACCCAGGTGCGCGTCAAGTTCCTGGACGACCAGAACCGCCTGATCATG
genomic: AGCTCGCTATTGTCATGAAGGTCATCGGCCGCACTGGCTCGCGTGGCCAGgtgcgtcggc ... gggtgcgcagGTGACCCAGGTGCGCGTCAAGTTCCTGGACGACCAGAACCGCCTGATCATG
EST: gi|34989394|gb|CF563311.1|CF563311
EST:     AGCTCGCTATTGTCATGAAGGTCATCGGCCGCACTGGCTCGCGTGGCCAG                         GTGACCCAGGTGCGCGTCAAGTTCCTGGACGACCAGAACCGCCTGATCATG
genomic: AGCTCGCTATTGTCATGAAGGTCATCGGCCGCACTGGCTCGCGTGGCCAGgtgcgtcggc ... gggtgcgcagGTGACCCAGGTGCGCGTCAAGTTCCTGGACGACCAGAACCGCCTGATCATG
EST: gi|10783401|gb|AV640073.1|AV640073
EST:     AGCTCGCTATTGTCATGAAGGTCATCGGCCGCACTGGCTCGCGTGGCCAG                         GTGACCCAGGTGCGCGTCAAGTTCCTGGACGACCAGAACCGCCTGATCATG
genomic: AGCTCGCTATTGTCATGAAGGTCATCGGCCGCACTGGCTCGCGTGGCCAGgtgcgtcggc ... gggtgcgcagGTGACCCAGGTGCGCGTCAAGTTCCTGGACGACCAGAACCGCCTGATCATG
EST: gi|34993622|gb|CF567539.1|CF567539
EST:     AGCTCGCTATTGTCATGAAGGTCATCGGCCGCACTGGCTCGCGTGGCCAG                         GTGACCCAGGTGCGCGTCAAGTTCCTGGACGACCAGAACCGCCTGATCATG
genomic: AGCTCGCTATTGTCATGAAGGTCATCGGCCGCACTGGCTCGCGTGGCCAGgtgcgtcggc ... gggtgcgcagGTGACCCAGGTGCGCGTCAAGTTCCTGGACGACCAGAACCGCCTGATCATG
EST: gi|34989393|gb|CF563310.1|CF563310
EST:     AGCTCGCTATTGTCATGAAGGTCATCGGCCGCACTGGCTCGCGTGGCCAG                         GTGACCCAGGTGCGCGTCAAGTTCCTGGACGACCAGAACCCCCTGATCATG
genomic: AGCTCGCTATTGTCATGAAGGTCATCGGCCGCACTGGCTCGCGTGGCCAGgtgcgtcggc ... gggtgcgcagGTGACCCAGGTGCGCGTCAAGTTCCTGGACGACCAGAACCGCCTGATCATG
EST: gi|34983424|gb|CF557341.1|CF557341
EST:     AGCTCGCTATTGTCATGAAGGTCATCGGCCGCACTGGCTCGCGTGGCCAG                         GTGACCCAGGTGCGCGTCAAGTTCCTGGACGACCAGAACCGCCTGATCATG
genomic: AGCTCGCTATTGTCATGAAGGTCATCGGCCGCACTGGCTCGCGTGGCCAGgtgcgtcggc ... gggtgcgcagGTGACCCAGGTGCGCGTCAAGTTCCTGGACGACCAGAACCGCCTGATCATG
EST: gi|10789573|gb|AV645302.1|AV645302
EST:     AGCTCGCTATTGTCATGAAGGTCATCGGCCGCACTGGCTCGCGTGGCCAG                         GTGACCCAGGTGCGCGTCAAGTTCCTGGACGACCAGAACCGCCTGATCATG
genomic: AGCTCGCTATTGTCATGAAGGTCATCGGCCGCACTGGCTCGCGTGGCCAGgtgcgtcggc ... gggtgcgcagGTGACCCAGGTGCGCGTCAAGTTCCTGGACGACCAGAACCGCCTGATCATG
EST: gi|10125832|gb|BE724536.1|BE724536
EST:     AGCTCGCTATTGTCATGAAGGTCATCGGCCGCACTGGCTCGCGTGGCCAG                         GTGACCCAGGTGCGCGTCAAGTTCCTGGACGACCAGAACCGCCTGATCATG
genomic: AGCTCGCTATTGTCATGAAGGTCATCGGCCGCACTGGCTCGCGTGGCCAGgtgcgtcggc ... gggtgcgcagGTGACCCAGGTGCGCGTCAAGTTCCTGGACGACCAGAACCGCCTGATCATG
EST: gi|34988802|gb|CF562719.1|CF562719
EST:     AGCTCGCTATTGTCATGAAGGTCATCGGCCGCACTGGCTCGCGTGGCCAG                         GTGACCCAGGTGCGCGTCAAGTTCCTGGACGACCAGAACCGCCTGATCATG
genomic: AGCTCGCTATTGTCATGAAGGTCATCGGCCGCACTGGCTCGCGTGGCCAGgtgcgtcggc ... gggtgcgcagGTGACCCAGGTGCGCGTCAAGTTCCTGGACGACCAGAACCGCCTGATCATG
EST: gi|34993422|gb|CF567339.1|CF567339
EST:     AGCTCGCTATTGTCATGAAGGTCATCGGCCGCACTGGCTCGCGTGGCCAG                         GTGACCCAGGTGCGCGTCAAGTTCCTGGACGACCAGAACCGCCTGATCATG
genomic: AGCTCGCTATTGTCATGAAGGTCATCGGCCGCACTGGCTCGCGTGGCCAGgtgcgtcggc ... gggtgcgcagGTGACCCAGGTGCGCGTCAAGTTCCTGGACGACCAGAACCGCCTGATCATG
EST: gi|34986739|gb|CF560656.1|CF560656
EST:     AGCTCGCTATTGTCATGAAGGTCATCGGCCGCACTGGCTCGCGTGGCCAG                         GTGACCCAGGTGCGCGTCAAGTTCCTGGACGACCAGAACCGCCTGATCATG
genomic: AGCTCGCTATTGTCATGAAGGTCATCGGCCGCACTGGCTCGCGTGGCCAGgtgcgtcggc ... gggtgcgcagGTGACCCAGGTGCGCGTCAAGTTCCTGGACGACCAGAACCGCCTGATCATG
EST: gi|34993148|gb|CF567065.1|CF567065
EST:     AGCTCGCTATTGTCATGAAGGTCATCGGCCGCACTGGCTCGCGTGGCCAG                         GTGACCCAGGTGCGCGTCAAGTTCCTGGACGACCAGAACCGCCTGATCATG
genomic: AGCTCGCTATTGTCATGAAGGTCATCGGCCGCACTGGCTCGCGTGGCCAGgtgcgtcggc ... gggtgcgcagGTGACCCAGGTGCGCGTCAAGTTCCTGGACGACCAGAACCGCCTGATCATG
EST: gi|34992624|gb|CF566541.1|CF566541
EST:     AGCTCGCTATTGTCATGAAGGTCATCGGCCGCACTGGCTCGCGTGGCCAG                         GTGACCCAGGTGCGCGTCAAGTTCCTGGACGACCAGAACCGCCTGATCATG
genomic: AGCTCGCTATTGTCATGAAGGTCATCGGCCGCACTGGCTCGCGTGGCCAGgtgcgtcggc ... gggtgcgcagGTGACCCAGGTGCGCGTCAAGTTCCTGGACGACCAGAACCGCCTGATCATG
EST: gi|15372414|gb|BI531840.1|BI531840
EST:     AGCTCGCTATTGTCATGAAGGTCATCGGCCGCACTGGCTCGCGTGGCCAG                         GTGACCCAGGTGCGCGTCAAGTTCCTGGACGACCAGAACCGCCTGATCATG
genomic: AGCTCGCTATTGTCATGAAGGTCATCGGCCGCACTGGCTCGCGTGGCCAGgtgcgtcggc ... gggtgcgcagGTGACCCAGGTGCGCGTCAAGTTCCTGGACGACCAGAACCGCCTGATCATG
EST: gi|34987662|gb|CF561579.1|CF561579
EST:     AACTAAATATTGTCATGAAGGTCATCGGCCGCACTGGCTCGCGTGGCCAG                         GTGACCCAGGTGCGCGTCAAGTTCCTGGACGACCAGAACCGCCTGATCATG
genomic: AGCTCGCTATTGTCATGAAGGTCATCGGCCGCACTGGCTCGCGTGGCCAGgtgcgtcggc ... gggtgcgcagGTGACCCAGGTGCGCGTCAAGTTCCTGGACGACCAGAACCGCCTGATCATG
EST: gi|34993615|gb|CF567532.1|CF567532
EST:     AGCTCGCTATTGTCATGAAGGTCATCGGCCGCACTGGCTCGCGTGGCCAG                         GTGACCCAGGTGCGCGTCAAGTTCCTGGACGACCAGAACCGCCTGATCATG
genomic: AGCTCGCTATTGTCATGAAGGTCATCGGCCGCACTGGCTCGCGTGGCCAGgtgcgtcggc ... gggtgcgcagGTGACCCAGGTGCGCGTCAAGTTCCTGGACGACCAGAACCGCCTGATCATG
EST: gi|10788274|gb|AV644946.1|AV644946
EST:     AGCTCGCTATTGTCATGAAGGTCATCGGCCGCACTGGCTCGCGTGGCCAG                         GTGACCCAGGTGCGCGTCAAGTTCCTGGACGACCAGAACCGCCTGATCATG
genomic: AGCTCGCTATTGTCATGAAGGTCATCGGCCGCACTGGCTCGCGTGGCCAGgtgcgtcggc ... gggtgcgcagGTGACCCAGGTGCGCGTCAAGTTCCTGGACGACCAGAACCGCCTGATCATG
EST: gi|6544748|gb|AV390532.1|AV390532
EST:     AGCTCGCTATTGTCATGAAGGTCATCGGCCGCACTGGCTCGCGTGGCCAG                         GTGACCCAGGTGCGCGTCAAGTTCCTGGACGACCAGAACCGCCTGATCATG
genomic: AGCTCGCTATTGTCATGAAGGTCATCGGCCGCACTGGCTCGCGTGGCCAGgtgcgtcggc ... gggtgcgcagGTGACCCAGGTGCGCGTCAAGTTCCTGGACGACCAGAACCGCCTGATCATG
EST: gi|10786077|gb|AV642749.1|AV642749
EST:     AGCTCGCTATTGTCATGAAGGTCATCGGCCGCACTGGCTCGCGTGGCCAG                         GTGACCCAGGTGCGCGTCAAGTTCCTGGACGACCAGAACCGCCTGATCATG
genomic: AGCTCGCTATTGTCATGAAGGTCATCGGCCGCACTGGCTCGCGTGGCCAGgtgcgtcggc ... gggtgcgcagGTGACCCAGGTGCGCGTCAAGTTCCTGGACGACCAGAACCGCCTGATCATG
EST: gi|10788170|gb|AV644842.1|AV644842
EST:     AGCTCGCTATTGTCATGAAGGTCATCGGCCGCACTGGCTCGCGTGGCCAG                         GTGACCCAGGTGCGCGTCAAGTTCCTGGACGACCAGAACCGCCTGATCATG
genomic: AGCTCGCTATTGTCATGAAGGTCATCGGCCGCACTGGCTCGCGTGGCCAGgtgcgtcggc ... gggtgcgcagGTGACCCAGGTGCGCGTCAAGTTCCTGGACGACCAGAACCGCCTGATCATG