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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttcgtccgggtcgggtcgggactacatacgaatttcagttctaaatctcgattgcgctagcgctagcccttcggagcgcgggccgcaccttttaacagccctaacactatggtggtgctacccttgcccccctgcaacccacagATTCACGGCTTCTAAGGAGCCTCTAGTCGTGGCGGCACCCTGCGGTGTGCTGCGCGTAATAGCGCCAGTGGAGAGCACCCTTGGCGTGTTTCGGGCTGTC

Basic information

species Chlamydomonas reinhardtii
transcript EDP05192
intron # 2
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|22066161|gb|BQ816794.1|BQ816794
EST:     TCAGCGACTTCCTGCTGGGCCAGAAGCTCGTGAAGAAGGACCAGATCAAG                         ATTCACGGCTTCTAAGGAGCCTCTAGTCGTGGCGGCACCCTGCGGTGTGCT
genomic: TCAGCGACTTCCTGCTGGGCCAGAAGCTCGTGAAGAAGGACCAGATCAAGgttcgtccgg ... caacccacagATTCACGGCTTCTAAGGAGCCTCTAGTCGTGGCGGCACCCTGCGGTGTGCT
EST: gi|15700952|gb|BI725257.1|BI725257
EST:     TCAGCGACTTCCTGCTGGGCCAGAAGCTCGTGAAGAAGGACCAGATCAAG                         ATTCACGGCTTCTAAGGAGCCTCTAGTCGTGGCGGCACCCTGCGGTGTGCT
genomic: TCAGCGACTTCCTGCTGGGCCAGAAGCTCGTGAAGAAGGACCAGATCAAGgttcgtccgg ... caacccacagATTCACGGCTTCTAAGGAGCCTCTAGTCGTGGCGGCACCCTGCGGTGTGCT
EST: gi|7615920|gb|AW721360.1|AW721360
EST:     TCAGCGACTTCCTGCTGGGCCAGAAGCTCGTGAAGAAGGACCAGATCAAG                         ATTCACGGCTTCTAAGGAGCCTCTAGTCGTGGCGGCACCCTGCGGTGTGCT
genomic: TCAGCGACTTCCTGCTGGGCCAGAAGCTCGTGAAGAAGGACCAGATCAAGgttcgtccgg ... caacccacagATTCACGGCTTCTAAGGAGCCTCTAGTCGTGGCGGCACCCTGCGGTGTGCT
EST: gi|10771308|gb|AV622131.1|AV622131
EST:     TCAGCGACTTCCTGCTGGGCCAGAAGCTCGTGAAGAAGGACCAGATCAAG                         ATTCACGGCTTCTAAGGAGCCTCTAGTCGTGGCGGCA
genomic: TCAGCGACTTCCTGCTGGGCCAGAAGCTCGTGAAGAAGGACCAGATCAAGgttcgtccgg ... caacccacagATTCACGGCTTCTAAGGAGCCTCTAGTCGTGGCGGCA
EST: gi|14236375|gb|BG855191.1|BG855191
EST:     TCAGCGACTTCCTGCTGGGCCAGAAGCTCGTGAAGAAGGACCAGATCAAG                         ATTCACGGCTTCTAAGGAGCCTCTAGTCGTGGCGGCACCCTGCGGTGTGCT
genomic: TCAGCGACTTCCTGCTGGGCCAGAAGCTCGTGAAGAAGGACCAGATCAAGgttcgtccgg ... caacccacagATTCACGGCTTCTAAGGAGCCTCTAGTCGTGGCGGCACCCTGCGGTGTGCT
EST: gi|6550174|gb|AV395958.1|AV395958
EST:     TCAGCGACTTCCTGCTGGGCCAGAAGCTCGTGAAGAAGGACCAGATCAAG                         ATTCACGGCTTCTAAGGAGCCTCTAGTCGTGGCGGCACCCTGCGGTGTGCT
genomic: TCAGCGACTTCCTGCTGGGCCAGAAGCTCGTGAAGAAGGACCAGATCAAGgttcgtccgg ... caacccacagATTCACGGCTTCTAAGGAGCCTCTAGTCGTGGCGGCACCCTGCGGTGTGCT
EST: gi|15699965|gb|BI724270.1|BI724270
EST:     TCAGCGACTTCCTGCTGGGCCAGAAGCTCGTGAAGAAGGACCAGATCAAG                         ATTCACGGCTTCTAAGGAGCCTCTAGTCGTGGCGGCACCCTGCGGTGTGCT
genomic: TCAGCGACTTCCTGCTGGGCCAGAAGCTCGTGAAGAAGGACCAGATCAAGgttcgtccgg ... caacccacagATTCACGGCTTCTAAGGAGCCTCTAGTCGTGGCGGCACCCTGCGGTGTGCT
EST: gi|10768330|gb|AV619155.1|AV619155
EST:     TCAGCGACTTCCTGCTGGGCCAGAAGCTCGTGAAGAAGGACCAGATCAAG                         ATTCACGGCTTCTAAGGAGCCTCTAGTCGTGGCGGCACCCTGCGGTGTGCT
genomic: TCAGCGACTTCCTGCTGGGCCAGAAGCTCGTGAAGAAGGACCAGATCAAGgttcgtccgg ... caacccacagATTCACGGCTTCTAAGGAGCCTCTAGTCGTGGCGGCACCCTGCGGTGTGCT
EST: gi|22065217|gb|BQ816252.1|BQ816252
EST:     TCAGCGACTTCCTGCTGGGCCAGAAGCTCGTGAAGAAGGACCAGATCAAG                         ATTCACGGCTTCTAAGGAGCCTCTAGTCGTGGCGGCACCCTGCGGTGTGCT
genomic: TCAGCGACTTCCTGCTGGGCCAGAAGCTCGTGAAGAAGGACCAGATCAAGgttcgtccgg ... caacccacagATTCACGGCTTCTAAGGAGCCTCTAGTCGTGGCGGCACCCTGCGGTGTGCT
EST: gi|9027780|gb|BE237820.1|BE237820
EST:     TCAGCGACTTCCTGCTGGGCCAGAAGCTCGTGAAGAAGGACCAGATCAAG                         ATTCACGGCTTCTAAGGAGCCTCTAGTCGTGGCGGCACCCTGCGGTGTGCT
genomic: TCAGCGACTTCCTGCTGGGCCAGAAGCTCGTGAAGAAGGACCAGATCAAGgttcgtccgg ... caacccacagATTCACGGCTTCTAAGGAGCCTCTAGTCGTGGCGGCACCCTGCGGTGTGCT
EST: gi|9459278|gb|BE452527.1|BE452527
EST:     TCAGCGACTTCCTGCTGGGCCAGAAGCTCGTGAAGAAGGACCAGATCAAG                         ATTCACGGCTTCTAAGGAGCCTCTAGTCGTGGCGGCACCCTGCGGTGTGCT
genomic: TCAGCGACTTCCTGCTGGGCCAGAAGCTCGTGAAGAAGGACCAGATCAAGgttcgtccgg ... caacccacagATTCACGGCTTCTAAGGAGCCTCTAGTCGTGGCGGCACCCTGCGGTGTGCT
EST: gi|10772128|gb|AV622951.1|AV622951
EST:     TCAGCGACTTCCTGCTGGGCCAGAAGCTCGTGAAGAAGGACCAGATCAAG                         ATTCACGGCTTCTAAGGAGCCTCTAGTCGTGGCGGCACCCTGCGGTGTGCT
genomic: TCAGCGACTTCCTGCTGGGCCAGAAGCTCGTGAAGAAGGACCAGATCAAGgttcgtccgg ... caacccacagATTCACGGCTTCTAAGGAGCCTCTAGTCGTGGCGGCACCCTGCGGTGTGCT
EST: gi|10772013|gb|AV622836.1|AV622836
EST:     TCAGCGACTTCCTGCTGGGCCAGAAGCTCGTGAAGAAGGACCAGATCAAG                         ATTCACGGCTTCTAAGGAGCCTCTAGTCGTGGCGGCACC-TGCGGTGTGCT
genomic: TCAGCGACTTCCTGCTGGGCCAGAAGCTCGTGAAGAAGGACCAGATCAAGgttcgtccgg ... caacccacagATTCACGGCTTCTAAGGAGCCTCTAGTCGTGGCGGCACCCTGCGGTGTGCT
EST: gi|6541904|gb|AV387688.1|AV387688
EST:     TCAGCGACTTCCTGCTGGGCCAGAAGCTCGTGAAGAAGGACCAGATCAAG                         ATTCACGGCTTCTAAGGAGCCTCTAGTCGTGGCGGCACCCTGCGGTGTGCT
genomic: TCAGCGACTTCCTGCTGGGCCAGAAGCTCGTGAAGAAGGACCAGATCAAGgttcgtccgg ... caacccacagATTCACGGCTTCTAAGGAGCCTCTAGTCGTGGCGGCACCCTGCGGTGTGCT
EST: gi|22063696|gb|BQ815370.1|BQ815370
EST:     GCCAGAAGCTCGTGAAGAAGGACCAGATCAAG                         ATTCNCGGCTTCTAAGGAGCCTCTAGTCGTGGCGGCACCCTGCGGTGTGCT
genomic: GCCAGAAGCTCGTGAAGAAGGACCAGATCAAGgttcgtccgg ... caacccacagATTCACGGCTTCTAAGGAGCCTCTAGTCGTGGCGGCACCCTGCGGTGTGCT
EST: gi|23359633|gb|BU647453.1|BU647453
EST:     TCAGCGACTTCCTGCTGGGCCAGAAGCTCGTGAAGAAGGACCAGATCAAG                         ATTCACGGCTTCTAAGGAGCCTCTAGTCGTGGCGGCACCCTGCGGTGTGCT
genomic: TCAGCGACTTCCTGCTGGGCCAGAAGCTCGTGAAGAAGGACCAGATCAAGgttcgtccgg ... caacccacagATTCACGGCTTCTAAGGAGCCTCTAGTCGTGGCGGCACCCTGCGGTGTGCT
EST: gi|8514205|gb|BE122100.1|BE122100
EST:     TCAGCGACTTCCTGCTGGGCCAGAAGCTCGTGAAGAAGGACCAGATCAAG                         ATTCACGGCTTCTAAGGAGCCTCTAGTCGTGGCGGCACCCTGCGGTGTGCT
genomic: TCAGCGACTTCCTGCTGGGCCAGAAGCTCGTGAAGAAGGACCAGATCAAGgttcgtccgg ... caacccacagATTCACGGCTTCTAAGGAGCCTCTAGTCGTGGCGGCACCCTGCGGTGTGCT
EST: gi|16071543|gb|BI873539.1|BI873539
EST:     TCAGCGACTTCCTGCTGGGCCAGAAGCTCGTGAAGAAGGACCAGATCAAG                         ATTCACGGCTTCTAAGGAGCCTCTAGTCGTGGCGGCACCCTGCGGTGTGCT
genomic: TCAGCGACTTCCTGCTGGGCCAGAAGCTCGTGAAGAAGGACCAGATCAAGgttcgtccgg ... caacccacagATTCACGGCTTCTAAGGAGCCTCTAGTCGTGGCGGCACCCTGCGGTGTGCT
EST: gi|22058683|gb|BQ813067.1|BQ813067
EST:     TCAGCGACTTCCTGCTGGGCCAGAAGCTCGTGAAGAAGGACCAGATCAAG                         ATTCACGGCTTCTAAGGAGCCTCTAGTCGTGGCGGCACCCTTGCGGTGTGC
genomic: TCAGCGACTTCCTGCTGGGCCAGAAGCTCGTGAAGAAGGACCAGATCAAGgttcgtccgg ... caacccacagATTCACGGCTTCTAAGGAGCCTCTAGTCGTGGCGGCACCCT-GCGGTGTGC
EST: gi|15693263|gb|BI717568.1|BI717568
EST:     TCAGCGACTTCCTGCTGGGCCAAAAGCTCGTGAAGAAGGGCCAGATCAAG                         ATTCACGGCTTCTAAGGAGCCTCTAGTCGTGGCGGCACCCTGCGGTGTGCT
genomic: TCAGCGACTTCCTGCTGGGCCAGAAGCTCGTGAAGAAGGACCAGATCAAGgttcgtccgg ... caacccacagATTCACGGCTTCTAAGGAGCCTCTAGTCGTGGCGGCACCCTGCGGTGTGCT
EST: gi|15693264|gb|BI717569.1|BI717569
EST:     TCAGCGACTTCCTGCTGGGCCAGAAGCTCGTGAAGAAGGACCAGATCAAG                         ATTCACGGCTTCTAAGGAGCCTCTAGTCGTGGCGGCACCCTGCGGTGTGCT
genomic: TCAGCGACTTCCTGCTGGGCCAGAAGCTCGTGAAGAAGGACCAGATCAAGgttcgtccgg ... caacccacagATTCACGGCTTCTAAGGAGCCTCTAGTCGTGGCGGCACCCTGCGGTGTGCT
EST: gi|22058686|gb|BQ813068.1|BQ813068
EST:     TCAGCGACTTCCTGCTGGGCCAGAAGCTCGTGAAGAAGGACCAGATCAAG                         ATTCACGGCTTCTAAGGAGCCTCTAGTCGTGGCGGCACCCTGCGGTGTGCT
genomic: TCAGCGACTTCCTGCTGGGCCAGAAGCTCGTGAAGAAGGACCAGATCAAGgttcgtccgg ... caacccacagATTCACGGCTTCTAAGGAGCCTCTAGTCGTGGCGGCACCCTGCGGTGTGCT
EST: gi|16072123|gb|BI874119.1|BI874119
EST:     TCAGCGACTTCCTGCTGGGCCAGAAGCTCGTGAAGAAGGACCAGATCAAG                         ATTCCCGGCTTTTAAGGAGCCTCTAGTCGTGGCGGCACCCTGCGGTGTGCT
genomic: TCAGCGACTTCCTGCTGGGCCAGAAGCTCGTGAAGAAGGACCAGATCAAGgttcgtccgg ... caacccacagATTCACGGCTTCTAAGGAGCCTCTAGTCGTGGCGGCACCCTGCGGTGTGCT
EST: gi|22066162|gb|BQ816795.1|BQ816795
EST:     TCAGCGACTTCCTGCTGGGCCAGAAGCTCGTGAAGAAGGACCAGATCAAG                         ATTCACGGCTTCTAAGGAGCCTCTAGTCGTGGCGGCACCCTGCGGTGTGCT
genomic: TCAGCGACTTCCTGCTGGGCCAGAAGCTCGTGAAGAAGGACCAGATCAAGgttcgtccgg ... caacccacagATTCACGGCTTCTAAGGAGCCTCTAGTCGTGGCGGCACCCTGCGGTGTGCT
EST: gi|10770626|gb|AV621451.1|AV621451
EST:     TCAGCGACTTCCTGCTGGGCCAGAAGCTCGTGAAGAAGGACCAGATCAAG                         ATTCACGGCTTCTAAGGAGCCTCTAGT
genomic: TCAGCGACTTCCTGCTGGGCCAGAAGCTCGTGAAGAAGGACCAGATCAAGgttcgtccgg ... caacccacagATTCACGGCTTCTAAGGAGCCTCTAGT
EST: gi|16428652|gb|BI993878.1|BI993878
EST:     TCAGCGACTTCCTGCTGGGCCAGAAGCTCGTGAAGAAGGACCAGATCAAG                         ATTCACGGCTTCTAAGGAGCCTCTAGTCGTGGCGGCACCCTGCGGTGTGCT
genomic: TCAGCGACTTCCTGCTGGGCCAGAAGCTCGTGAAGAAGGACCAGATCAAGgttcgtccgg ... caacccacagATTCACGGCTTCTAAGGAGCCTCTAGTCGTGGCGGCACCCTGCGGTGTGCT
EST: gi|7615919|gb|AW721359.1|AW721359
EST:     ACCAGATCAAG                         ATTCACGGCTTCTAAGGAGCCTCTAGTCGTGGCGGCACCCTGCGGTGTGCT
genomic: ACCAGATCAAGgttcgtccgg ... caacccacagATTCACGGCTTCTAAGGAGCCTCTAGTCGTGGCGGCACCCTGCGGTGTGCT
EST: gi|10771582|gb|AV622405.1|AV622405
EST:     TCAGCGACTTCCTGCTGGGCCAGAAGCTCGTGAAGAAGGACCAGATCAAG                         ATTCACGGCTTCTAAGGAGCCTCTAGTCGTGGCGGCACCCTGCGGTGTGCT
genomic: TCAGCGACTTCCTGCTGGGCCAGAAGCTCGTGAAGAAGGACCAGATCAAGgttcgtccgg ... caacccacagATTCACGGCTTCTAAGGAGCCTCTAGTCGTGGCGGCACCCTGCGGTGTGCT
EST: gi|15701221|gb|BI725526.1|BI725526
EST:     TCAGCGACTTCCTGCTGGGCCAGAAGCTCGTGAAGAAGGACCAGATCAAG                         ATTCACGGCTTCTAAGGAGCCTCTAGTCGTGGCGGCACCCTGCGGTGTGCT
genomic: TCAGCGACTTCCTGCTGGGCCAGAAGCTCGTGAAGAAGGACCAGATCAAGgttcgtccgg ... caacccacagATTCACGGCTTCTAAGGAGCCTCTAGTCGTGGCGGCACCCTGCGGTGTGCT
EST: gi|15372977|gb|BI532403.1|BI532403
EST:     TCAGCGACTTCCTGCTGGGCCAGAAGCTCGTGAAGAAGGACCAGATCAAG                         ATTCACGGCTTCTAAGGAGCCTCTAGTCGTGGCGGCACCCTGCGGTGTGCT
genomic: TCAGCGACTTCCTGCTGGGCCAGAAGCTCGTGAAGAAGGACCAGATCAAGgttcgtccgg ... caacccacagATTCACGGCTTCTAAGGAGCCTCTAGTCGTGGCGGCACCCTGCGGTGTGCT
EST: gi|15700954|gb|BI725259.1|BI725259
EST:     TCAGCGACTTCCTGCTGGGCCAGAAGCTCGTGAAGAAGGACCAGATCAAG                         ATTCACGGCTTCTAAGGAGCCTCTAGTCGTGGCGGCACCCTGCGGTGTGCT
genomic: TCAGCGACTTCCTGCTGGGCCAGAAGCTCGTGAAGAAGGACCAGATCAAGgttcgtccgg ... caacccacagATTCACGGCTTCTAAGGAGCCTCTAGTCGTGGCGGCACCCTGCGGTGTGCT
EST: gi|22072445|gb|BQ821783.1|BQ821783
EST:     TCAGCGACTTCCTGCTGGGCCAGAAGCTCGTGAAGAAGGACCAGATCAAG                         ATTCACGGCTTCTAAGGAGCCTCTAGTCGT
genomic: TCAGCGACTTCCTGCTGGGCCAGAAGCTCGTGAAGAAGGACCAGATCAAGgttcgtccgg ... caacccacagATTCACGGCTTCTAAGGAGCCTCTAGTCGT
EST: gi|22075235|gb|BQ824011.1|BQ824011
EST:     TCAGCGACTTCCTGCTGGGCCAGAAGCTCGTGAAGAAGGACCAGATCAAG                         ATTCACGGCTTCTAAGGAGCCTCTA
genomic: TCAGCGACTTCCTGCTGGGCCAGAAGCTCGTGAAGAAGGACCAGATCAAGgttcgtccgg ... caacccacagATTCACGGCTTCTAAGGAGCCTCTA
EST: gi|9459276|gb|BE452526.1|BE452526
EST:     TCAGCGACTTCCTGCTGGGCCAGAAGCTCGTGAAGAAGGACCAGATCAAG                         ATTCACGGCTTCTAAGGAGCCTCTAGTCGTGGCGGCACCCTGCGGTGTGCT
genomic: TCAGCGACTTCCTGCTGGGCCAGAAGCTCGTGAAGAAGGACCAGATCAAGgttcgtccgg ... caacccacagATTCACGGCTTCTAAGGAGCCTCTAGTCGTGGCGGCACCCTGCGGTGTGCT
EST: gi|10771717|gb|AV622540.1|AV622540
EST:     TCAGCGACTTCCTGCTGGGCCAGAAGCTCGTGAAGAAGGACCAGATCAAG                         ATTCACGGCTTCTAAGGAGCCTCTAGTCGTGGCGGCACCCTGCGGTGTGCT
genomic: TCAGCGACTTCCTGCTGGGCCAGAAGCTCGTGAAGAAGGACCAGATCAAGgttcgtccgg ... caacccacagATTCACGGCTTCTAAGGAGCCTCTAGTCGTGGCGGCACCCTGCGGTGTGCT
EST: gi|10788520|gb|AV626240.1|AV626240
EST:     TCAGCGACTTCCTGCTGGGCCAGAAGCTCGTGAAGAAGGACCAGATCAAG                         ATTCACGGCTTCTAAGGAGCCTCTAGTCGTGGCGGCACCCTGCGGTGTGCT
genomic: TCAGCGACTTCCTGCTGGGCCAGAAGCTCGTGAAGAAGGACCAGATCAAGgttcgtccgg ... caacccacagATTCACGGCTTCTAAGGAGCCTCTAGTCGTGGCGGCACCCTGCGGTGTGCT
EST: gi|16071564|gb|BI873560.1|BI873560
EST:     TCAGCGACTTCCTGCTGGGCCAGAAGCTCGTGAAGAAGGACCAGATCAAG                         ATTCACGGCTTCTAAGGAGCCTCTAGTCGTGGCGGCACCCTGCGGTGTGCT
genomic: TCAGCGACTTCCTGCTGGGCCAGAAGCTCGTGAAGAAGGACCAGATCAAGgttcgtccgg ... caacccacagATTCACGGCTTCTAAGGAGCCTCTAGTCGTGGCGGCACCCTGCGGTGTGCT
EST: gi|15700953|gb|BI725258.1|BI725258
EST:     TCAGCGACTTCCTGCTGGGCCAGAAGCTCGTGAAGAAGGACCAGATCAAG                         ATTCACGGCTTCTAAGGAGCCTCTAGTCGTGGCGGCACCCTGCGGTGTGCT
genomic: TCAGCGACTTCCTGCTGGGCCAGAAGCTCGTGAAGAAGGACCAGATCAAGgttcgtccgg ... caacccacagATTCACGGCTTCTAAGGAGCCTCTAGTCGTGGCGGCACCCTGCGGTGTGCT
EST: gi|9459074|gb|BE452424.1|BE452424
EST:     TCAGCGACTTCCTGCTGGGCCAGAAGCTCGTGAAGAAGGACCAGATCAAG                         ATTCACGGCTTCTAAGGAGCCTCTAGTCGTGGCGG-ACCCTGCGGTGTGCT
genomic: TCAGCGACTTCCTGCTGGGCCAGAAGCTCGTGAAGAAGGACCAGATCAAGgttcgtccgg ... caacccacagATTCACGGCTTCTAAGGAGCCTCTAGTCGTGGCGGCACCCTGCGGTGTGCT
EST: gi|22063699|gb|BQ815372.1|BQ815372
EST:     TCAGCGACTTCCTGCTGGGCCAGAAGCTCGTGAAGAAGGACCAGATCAAG                         ATTCACGGCTTCTAAGGAGCCTCTAGTCGTGGCGGCACCCTGCGGTGTGCT
genomic: TCAGCGACTTCCTGCTGGGCCAGAAGCTCGTGAAGAAGGACCAGATCAAGgttcgtccgg ... caacccacagATTCACGGCTTCTAAGGAGCCTCTAGTCGTGGCGGCACCCTGCGGTGTGCT
EST: gi|14238466|gb|BG857282.1|BG857282
EST:     TCAGCGACTTCCTGCTGGGCCAGAAGCTCGTGAAGAAGGACCAGATCAAG                         ATTCNCGGCTTCTAAGGAGCCTCTAGTCGTGGCGGCACCCTTCGGTGTGCT
genomic: TCAGCGACTTCCTGCTGGGCCAGAAGCTCGTGAAGAAGGACCAGATCAAGgttcgtccgg ... caacccacagATTCACGGCTTCTAAGGAGCCTCTAGTCGTGGCGGCACCCTGCGGTGTGCT
EST: gi|15372824|gb|BI532250.1|BI532250
EST:     TCAGCGACTTCCTGCTGGGCCAGAAGCTCGTGAAGAAGGACCAGATCAAG                         ATTCACGGCTTCTAAGGAGCCTCTAGTCGTGGCGGCACCCTGCGGTGTGCT
genomic: TCAGCGACTTCCTGCTGGGCCAGAAGCTCGTGAAGAAGGACCAGATCAAGgttcgtccgg ... caacccacagATTCACGGCTTCTAAGGAGCCTCTAGTCGTGGCGGCACCCTGCGGTGTGCT
EST: gi|49458977|gb|BP086890.1|BP086890
EST:     TCAGCGACTTCCTGCTGGGCCAGAAGCTCGTGAAGAAGGACCAGATCAAG                         ATTCACGGCTTCTAAGGAGCCTCT
genomic: TCAGCGACTTCCTGCTGGGCCAGAAGCTCGTGAAGAAGGACCAGATCAAGgttcgtccgg ... caacccacagATTCACGGCTTCTAAGGAGCCTCT
EST: gi|23359632|gb|BU647452.1|BU647452
EST:     AGGACCAGATCAAG                         ATTCACGGCTTCTAAGGAGCCTCTAGTCGTGGCGGCACCCTGCGGTGTGCT
genomic: AGGACCAGATCAAGgttcgtccgg ... caacccacagATTCACGGCTTCTAAGGAGCCTCTAGTCGTGGCGGCACCCTGCGGTGTGCT
EST: gi|6549951|gb|AV395735.1|AV395735
EST:     GGACCAGATCAAG                         ATTCACGGCTTCTAAGGAGCCTCTAGTCGTGGCGGCACCCTGCGGTGTGCT
genomic: GGACCAGATCAAGgttcgtccgg ... caacccacagATTCACGGCTTCTAAGGAGCCTCTAGTCGTGGCGGCACCCTGCGGTGTGCT
EST: gi|10770403|gb|AV621228.1|AV621228
EST:     TCAGCGACTTCCTGCTGGGCCAGAAGCTCGTGAAGAAGGACCAGATCAAG                         ATTCACGGCTTCTAAGGAGCCTCTAGTCGTGGCGGCACCCTGCGGTGTGCT
genomic: TCAGCGACTTCCTGCTGGGCCAGAAGCTCGTGAAGAAGGACCAGATCAAGgttcgtccgg ... caacccacagATTCACGGCTTCTAAGGAGCCTCTAGTCGTGGCGGCACCCTGCGGTGTGCT
EST: gi|16434470|gb|BI999696.1|BI999696
EST:     TCAGCGACTTCCTGCTGGGCCAGAAGCTCGTGAAGAAGGACCAGATCAAG                         ATTCACGGCTTCTAAGGAGCCTCTAGTCGTGGCGGCACCCTGCGGTGTGCT
genomic: TCAGCGACTTCCTGCTGGGCCAGAAGCTCGTGAAGAAGGACCAGATCAAGgttcgtccgg ... caacccacagATTCACGGCTTCTAAGGAGCCTCTAGTCGTGGCGGCACCCTGCGGTGTGCT
EST: gi|16073148|gb|BI875144.1|BI875144
EST:     TCAGCGACTTCCTGCTGGGCCAGAAGCTCGTGAAGAAGGACCAGATCAAG                         ATTCACGGCTTCTAAGGAGCCTCTAGTCGTGGCGGCACCCTGCGGTGTGCT
genomic: TCAGCGACTTCCTGCTGGGCCAGAAGCTCGTGAAGAAGGACCAGATCAAGgttcgtccgg ... caacccacagATTCACGGCTTCTAAGGAGCCTCTAGTCGTGGCGGCACCCTGCGGTGTGCT
EST: gi|7687070|gb|AW757718.1|AW757718
EST:     TCAGCGACTTCCTGCTGGGCCAGAAGCTCGTGAAGAATGACCAGATCAAG                         ATTCACGGCTTCTAAGGAGCCTCTAGTCGTGGCGGCACCCTGCGGTGTGCT
genomic: TCAGCGACTTCCTGCTGGGCCAGAAGCTCGTGAAGAAGGACCAGATCAAGgttcgtccgg ... caacccacagATTCACGGCTTCTAAGGAGCCTCTAGTCGTGGCGGCACCCTGCGGTGTGCT
EST: gi|10771916|gb|AV622739.1|AV622739
EST:     TCAGCGACTTCCTGCTGGGCCAGAAGCTCGTGAAGAAGGACCAGATCAAG                         ATTCACGGCTTCTAAGGAGCCT
genomic: TCAGCGACTTCCTGCTGGGCCAGAAGCTCGTGAAGAAGGACCAGATCAAGgttcgtccgg ... caacccacagATTCACGGCTTCTAAGGAGCCT
EST: gi|9441295|gb|BE441899.1|BE441899
EST:     TCAGCGACTTCCTGCTGGGCCAGAAGCTCGTGAAGAAGGACCAGATCAAG                         ATTCACGGCTTCTAAGGAGCCTCTAGTCGTGGCGGCACCCTGCGGTGTGCT
genomic: TCAGCGACTTCCTGCTGGGCCAGAAGCTCGTGAAGAAGGACCAGATCAAGgttcgtccgg ... caacccacagATTCACGGCTTCTAAGGAGCCTCTAGTCGTGGCGGCACCCTGCGGTGTGCT
EST: gi|22066908|gb|BQ817228.1|BQ817228
EST:     TCAGCGACTTCCTGCTGGGCCAGAAGCTCGTGAAGAAGGACCAGATCAAG                         ATTCACGGCTTCTAAGGAGCCTCTAGTCGTGGCGGCACCCTGCGGTGTGCT
genomic: TCAGCGACTTCCTGCTGGGCCAGAAGCTCGTGAAGAAGGACCAGATCAAGgttcgtccgg ... caacccacagATTCACGGCTTCTAAGGAGCCTCTAGTCGTGGCGGCACCCTGCGGTGTGCT
EST: gi|15372976|gb|BI532402.1|BI532402
EST:     GACTTCCTGCTGGGCCAGAAGCTCGTGAAGAAGGACCAGATCAAG                         ATTCACGGCTTTTAAGGAGCCTCTAGTCGTGGCGGCACCCTGCGGTGTGCT
genomic: GACTTCCTGCTGGGCCAGAAGCTCGTGAAGAAGGACCAGATCAAGgttcgtccgg ... caacccacagATTCACGGCTTCTAAGGAGCCTCTAGTCGTGGCGGCACCCTGCGGTGTGCT
EST: gi|10772712|gb|AV623535.1|AV623535
EST:     CAGCGACTTCCTGCTGGGCCAGAAGCTCGTGAAGAAGGCAC-AGATCACG                         ATTCACGGCTTCTAAGGAGCCTCTAG
genomic: CAGCGACTTCCTGCTGGGCCAGAAGCTCGTGAAGAAGG-ACCAGATCAAGgttcgtccgg ... caacccacagATTCACGGCTTCTAAGGAGCCTCTAG
EST: gi|16073147|gb|BI875143.1|BI875143
EST:     TCAGCGACTTCCTGCTGGGCCAGAAGCTCGTGAAGAAGGACCAGATCAAG                         ATTCACGGCTTCTAAGGAGCCTCTAGTCGTGGCGGCACCCTGCGGTGTGCT
genomic: TCAGCGACTTCCTGCTGGGCCAGAAGCTCGTGAAGAAGGACCAGATCAAGgttcgtccgg ... caacccacagATTCACGGCTTCTAAGGAGCCTCTAGTCGTGGCGGCACCCTGCGGTGTGCT
EST: gi|16071585|gb|BI873581.1|BI873581
EST:     TCAGCGACTTCCTGCTGGGCCAGAAGCTCGTGAAGAAGGACCAGATCAAG                         ATTCACGGCTTCTAAGGAGCCTCTAGTCGTGGCGGCACCCTGCGGTGTGCT
genomic: TCAGCGACTTCCTGCTGGGCCAGAAGCTCGTGAAGAAGGACCAGATCAAGgttcgtccgg ... caacccacagATTCACGGCTTCTAAGGAGCCTCTAGTCGTGGCGGCACCCTGCGGTGTGCT
EST: gi|14236442|gb|BG855258.1|BG855258
EST:     TCAGCGACTTCCTGCTGGGCCAGAAGCTCGTGAAGAAGGACCAGATCAAG                         ATTCACGGCTTTTAAGGAGCCTCTAGTCGTGGCGGCACCCTGCGGTGTGCT
genomic: TCAGCGACTTCCTGCTGGGCCAGAAGCTCGTGAAGAAGGACCAGATCAAGgttcgtccgg ... caacccacagATTCACGGCTTCTAAGGAGCCTCTAGTCGTGGCGGCACCCTGCGGTGTGCT
EST: gi|22064629|gb|BQ815913.1|BQ815913
EST:     TCAGCGACTTCCTGCTGGGCCAGAAGCTCGTGAAGAAGGACCAGATCAAG                         ATTCACGGCTTCTAAGGAGCCTCTAGTCGTGGCGGCACCCTGCGGTGTGCT
genomic: TCAGCGACTTCCTGCTGGGCCAGAAGCTCGTGAAGAAGGACCAGATCAAGgttcgtccgg ... caacccacagATTCACGGCTTCTAAGGAGCCTCTAGTCGTGGCGGCACCCTGCGGTGTGCT
EST: gi|22072443|gb|BQ821781.1|BQ821781
EST:     GGGCCAGAAGCTCGTGAAGAAGGACCAGATCAAG                         ATTCACGGCTTTTAAGGAGCCTCTAGTCGTGGCGGCACCCTGCGGTGTGCT
genomic: GGGCCAGAAGCTCGTGAAGAAGGACCAGATCAAGgttcgtccgg ... caacccacagATTCACGGCTTCTAAGGAGCCTCTAGTCGTGGCGGCACCCTGCGGTGTGCT
EST: gi|22063420|gb|BQ815200.1|BQ815200
EST:     TCAGCGACTTCCTGCTGGGCCAGAAGCTCGTGAAGAAGGACCAGATCAAG                         ATTCACGGCTTCTAAGGAGCCTCTAGTCGTGGCGGCACCCTGCG
genomic: TCAGCGACTTCCTGCTGGGCCAGAAGCTCGTGAAGAAGGACCAGATCAAGgttcgtccgg ... caacccacagATTCACGGCTTCTAAGGAGCCTCTAGTCGTGGCGGCACCCTGCG
EST: gi|15699964|gb|BI724269.1|BI724269
EST:     TCAGCGACTTCCTGCTGGGCCAGAAGCTCGTGAAGAAGGACCAGATCAAG                         ATTCCCGGCTTTTAAGGAGCCTCTAGTCGTGGCGGCACCCTGCGGTGTGCT
genomic: TCAGCGACTTCCTGCTGGGCCAGAAGCTCGTGAAGAAGGACCAGATCAAGgttcgtccgg ... caacccacagATTCACGGCTTCTAAGGAGCCTCTAGTCGTGGCGGCACCCTGCGGTGTGCT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttttaacagccctaacactatggtggtgctacccttgcccccctgcaacccacagATTCACGGCTTCTAAGGAGCCTCTAGTCGTGGCGGCACCCTGCGGTGTGCTGCGCGTAATAGCGCCAGTGGAGAGCACCCTTGGCGTGTTTCGGGCTGTC
         ccctaac  putative branch site (score: 2)
                               cccttgcccccctgc  putative PPT
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gttcgtccgggtcgggtcgggactacatacgaatttcagttctaaatctcgattgcgctagcgctagcccttcggagcgcgggccgcaccttttaacagccctaacactatggtggtgctacccttgcccccctgcaacccacagATTCACGGCTTCTAAGGAGCCTCTAGTCGTGGCGGCACCCTGCGGTGTGCTGCGCGTAATAGCGCCAGTGGAGAGCACCCTTGGCGTGTTTCGGGCTGTC

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCA