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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgggtccgccgcgttgcttccggtgcaaaatgcccaggttaactaggggaggcgctaactgcgcgccatgcggctcacctgcagGACCCTTACGCGGTGCTGGTGCTGGCGGACCAAACCCACCGTTCTAAGACCATTACGG

Basic information

species Chlamydomonas reinhardtii
transcript EDP04678
intron # 2
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|22068781|gb|BQ818573.1|BQ818573
EST:     TGAAGGACGTGGAGTTTGTGGGCGTGCTGGGAGTTGGCGTCGGCAAGCAG                         GACCCTTACGCGGTGCTGGTGCTGGCGGACCAAACCCACCGTTCTAAGACC
genomic: TGAAGGACGTGGAGTTTGTGGGCGTGCTGGGAGTTGGCGTCGGCAAGCAGgtgggtccgc ... tcacctgcagGACCCTTACGCGGTGCTGGTGCTGGCGGACCAAACCCACCGTTCTAAGACC
EST: gi|15701693|gb|BI725998.1|BI725998
EST:     GGGCGTGCTGGGAGTTGGCGTCGGCAAGCAG                         GACCCTTACGCGGTGCTGGTGCTGGCGGACCAAACCCACCGTTCTAAGACC
genomic: GGGCGTGCTGGGAGTTGGCGTCGGCAAGCAGgtgggtccgc ... tcacctgcagGACCCTTACGCGGTGCTGGTGCTGGCGGACCAAACCCACCGTTCTAAGACC
EST: gi|7593328|gb|AW707579.1|AW707579
EST:     TGAAGGACGTGGAGTTTGTGGGCGTGCTGGGAGTTGGCGTCGGCAAGCAG                         GACCCTTACGCGGTGCTGGTGCTGGCGGACCAAACCCACCGTTCTAAGACC
genomic: TGAAGGACGTGGAGTTTGTGGGCGTGCTGGGAGTTGGCGTCGGCAAGCAGgtgggtccgc ... tcacctgcagGACCCTTACGCGGTGCTGGTGCTGGCGGACCAAACCCACCGTTCTAAGACC
EST: gi|161814033|gb|FC100044.1|FC100044
EST:     TGAAGGACGTGGAGTTTGTGGGCGTGCTGGGAGTTGGCGTCGGCAAGCAG                         GACCCTTACGCGGTGCTGGTGCTGGCGGACCAAACCCACCGTTCTAAGACC
genomic: TGAAGGACGTGGAGTTTGTGGGCGTGCTGGGAGTTGGCGTCGGCAAGCAGgtgggtccgc ... tcacctgcagGACCCTTACGCGGTGCTGGTGCTGGCGGACCAAACCCACCGTTCTAAGACC
EST: gi|10793430|gb|AV630796.1|AV630796
EST:     TGAAGGACGTGGAGTTTGTGGGCGTGCTGGGAGTTGGCGTCGGCAAGCAG                         GACCCTTACGCGGTGCTGGTGCTGGCGGACCAAACCCACCGTTCTAAGACC
genomic: TGAAGGACGTGGAGTTTGTGGGCGTGCTGGGAGTTGGCGTCGGCAAGCAGgtgggtccgc ... tcacctgcagGACCCTTACGCGGTGCTGGTGCTGGCGGACCAAACCCACCGTTCTAAGACC
EST: gi|161797060|gb|FC085665.1|FC085665
EST:     TGAAGGACGTGGAGTTTGTGGGCGTGCTGGGAGTTGGCGTCGGCAAGCAG                         GACCCTTACGCGGTGCTGGTGCTGGCGGACCAAACCCACCGTTCTAAGACC
genomic: TGAAGGACGTGGAGTTTGTGGGCGTGCTGGGAGTTGGCGTCGGCAAGCAGgtgggtccgc ... tcacctgcagGACCCTTACGCGGTGCTGGTGCTGGCGGACCAAACCCACCGTTCTAAGACC
EST: gi|22064621|gb|BQ815905.1|BQ815905
EST:     TGGGAGTTGGCGTCGGCAAGCAG                         GACCCTTACGCGGTGCTGGTGCTGGCGGACCAAACCCACCGTTCTAAGACC
genomic: TGGGAGTTGGCGTCGGCAAGCAGgtgggtccgc ... tcacctgcagGACCCTTACGCGGTGCTGGTGCTGGCGGACCAAACCCACCGTTCTAAGACC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atgcccaggttaactaggggaggcgctaactgcgcgccatgcggctcacctgcagGACCCTTACGCGGTGCTGGTGCTGGCGGACCAAACCCACCGTTCTAAGACCATTACGG
                                            ctcacct  CT-rich tract
         ttaacta  TA-rich tract