1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
gtgcgcgggttcgcgggagaggcagcgcgtggtggggttctggggcaaaccagcacatgcctggtcacgtaccacacccctccgcccgcgccctcggctcttgacgttgctgagcagcggcaagcgcgcgcgtgctttgtataacaactgaggtggtgccctcatgaaatgctggacttgcagGTTTGGGGCCCTACGCTGCTCCCATCAAGAAGGTCGAGCAGGACGTCAAGGATGTACTCAAGCG
species | Chlamydomonas reinhardtii |
transcript | EDP03835 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: CCCCATCAAAGCGCTGGATGAGACTGATATCGCTTTCCTGAAGAACTACG GTTTGGGGCCCTACGCTGCTCCCATCAAGAAGGTCGAGCAGGACGTCAAGGEST: gi|14226250|gb|BG845066.1|BG845066
genomic: CCCCATCAAAGCGCTGGATGAGACTGATATCGCTTTCCTGAAGAACTACGgtgcgcgggt ... ggacttgcagGTTTGGGGCCCTACGCTGCTCCCATCAAGAAGGTCGAGCAGGACGTCAAGG
EST: CCCCATCAAAGCGCTGGATGAGACTGATATCGCTTTCCTGAAGAACTACG GTTTGGGGCCCTACGCTGCTCCCATCAAGAAGGTCGAGCAGGACGTCAAGGEST: gi|23365334|gb|BU653154.1|BU653154
genomic: CCCCATCAAAGCGCTGGATGAGACTGATATCGCTTTCCTGAAGAACTACGgtgcgcgggt ... ggacttgcagGTTTGGGGCCCTACGCTGCTCCCATCAAGAAGGTCGAGCAGGACGTCAAGG
EST: CCCCATCAAAGCGCTGGATGAGACTGATATCGCTTTCCTGAAGAACTACG GTTTGGGGCCCTACGCTGCTCCCATCAAGAAGGTCGAGCAGGACGTCAAGGEST: gi|22065629|gb|BQ816456.1|BQ816456
genomic: CCCCATCAAAGCGCTGGATGAGACTGATATCGCTTTCCTGAAGAACTACGgtgcgcgggt ... ggacttgcagGTTTGGGGCCCTACGCTGCTCCCATCAAGAAGGTCGAGCAGGACGTCAAGG
EST: CCCCATCAAAGCGCTGGATGAGACTGATATCGCTTTCCTGAAGAACTACG GTTTGGGGCCCTACGCTGCTCCCATCAAGAAGGTCGAGCAGGACGTCAAGGEST: gi|14228702|gb|BG847518.1|BG847518
genomic: CCCCATCAAAGCGCTGGATGAGACTGATATCGCTTTCCTGAAGAACTACGgtgcgcgggt ... ggacttgcagGTTTGGGGCCCTACGCTGCTCCCATCAAGAAGGTCGAGCAGGACGTCAAGG
EST: CCCCATCAAAGCGCTGGATGAGACTGATATCGCTTTCCTGAAGAACTACG GTTTGGGGCCCTACGCTGCTCCCATCAAGAAGGTCGAGCAGGACGTCAAGGEST: gi|49468177|gb|BP096038.1|BP096038
genomic: CCCCATCAAAGCGCTGGATGAGACTGATATCGCTTTCCTGAAGAACTACGgtgcgcgggt ... ggacttgcagGTTTGGGGCCCTACGCTGCTCCCATCAAGAAGGTCGAGCAGGACGTCAAGG
EST: CCCCATCAAAGCGCTGGATGAGACTGATATCGCTTTCCTGAAGAACTACG GTTTGGGGCCCTACGCTGCTCCCATCAAGAAGGTCGAGCAGGACGTCAAGGEST: gi|10793133|gb|AV630499.1|AV630499
genomic: CCCCATCAAAGCGCTGGATGAGACTGATATCGCTTTCCTGAAGAACTACGgtgcgcgggt ... ggacttgcagGTTTGGGGCCCTACGCTGCTCCCATCAAGAAGGTCGAGCAGGACGTCAAGG
EST: CCCCATCAAAGCGCTGGATGAGACTGATATCGCTTTCCTGAAGAACTACG GTTTGGGGCCCTACGCTGCTCCCATCAAGAAGGTCGAGCAGGACGTCAAGGEST: gi|14226251|gb|BG845067.1|BG845067
genomic: CCCCATCAAAGCGCTGGATGAGACTGATATCGCTTTCCTGAAGAACTACGgtgcgcgggt ... ggacttgcagGTTTGGGGCCCTACGCTGCTCCCATCAAGAAGGTCGAGCAGGACGTCAAGG
EST: CCCCATCAAAGCGCTGGATGAGACTGATATCGCTTTCCTGAAGAACTACG GTTTGGGGCCCTACGCTGCTCCCATCAAGAAGGTCGAGCAGGACGTCAAGGEST: gi|22076877|gb|BQ825653.1|BQ825653
genomic: CCCCATCAAAGCGCTGGATGAGACTGATATCGCTTTCCTGAAGAACTACGgtgcgcgggt ... ggacttgcagGTTTGGGGCCCTACGCTGCTCCCATCAAGAAGGTCGAGCAGGACGTCAAGG
EST: CCCCATCAAAGCGCTGGATGAGACTGATATCGCTTTCCTGAAGAACTACG GTTTGGGGCCCTACGCTGCTCCCATCAAGAAGGTCGAGCAGGACGTCAAGGEST: gi|10789963|gb|AV627328.1|AV627328
genomic: CCCCATCAAAGCGCTGGATGAGACTGATATCGCTTTCCTGAAGAACTACGgtgcgcgggt ... ggacttgcagGTTTGGGGCCCTACGCTGCTCCCATCAAGAAGGTCGAGCAGGACGTCAAGG
EST: CCCCATCAAAGCGCTGGATGAGACTGATATCGCTTTCCTGAAGAACTACG GTTTGGGGCCCTACGCTGCTCCCATCAAGAAGGTCGAGCAGGACGTCAAGG
genomic: CCCCATCAAAGCGCTGGATGAGACTGATATCGCTTTCCTGAAGAACTACGgtgcgcgggt ... ggacttgcagGTTTGGGGCCCTACGCTGCTCCCATCAAGAAGGTCGAGCAGGACGTCAAGG
cgcgtgctttgtataacaactgaggtggtgccctcatgaaatgctggacttgcagGTTTGGGGCCCTACGCTGCTCCCATCAAGAAGGTCGAGCAGGACGTCAAGGATGTACTCAAGCG
gtataac putative branch site (score: 3)
tttgtataa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgcgcgggttcgcgggagaggcagcgcgtggtggggttctggggcaaaccagcacatgcctggtcacgtaccacacccctccgcccgcgccctcggctcttgacgttgctgagcagcggcaagcgcgcgcgtgctttgtataacaactgaggtggtgccctcatgaaatgctggacttgcagGTTTGGGGCCCTACGCTGCTCCCATCAAGAAGGTCGAGCAGGACGTCAAGGATGTACTCAAGCG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG