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...tccacccgccgtgtcgacagggcatgcacagcctgtcacatcggctgcacggctgtatgacggacctagcttcacgcggcatcgcacgtctgcgccgtagGTACGAGTGGCTGGACCCGGCCATCAAGAAGACGGAGTGGACGCGCGAGGAGGATGAGAAGCTGCTGCATCTGGCAAAGCTGATGCCGTGCCAGTGGCGC
species | Chlamydomonas reinhardtii |
transcript | EDP03322 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: ATTTCGTCGCTGCTGGTGCGGAAGTCTGCCAAGCAGTGCAAAGCACGCTG GTACGAGTGGCTGGACCCGGCCATCAAGAAGACGGAGTGGACGCGCGAGGAEST: gi|10787044|gb|AV643716.1|AV643716
genomic: ATTTCGTCGCTGCTGGTGCGGAAGTCTGCCAAGCAGTGCAAAGCACGCTGgtgagcacag ... tgcgccgtagGTACGAGTGGCTGGACCCGGCCATCAAGAAGACGGAGTGGACGCGCGAGGA
EST: ATTTCGTCGCTGCTGGTGCGGAAGTCTGCCAAGCAGTGCAAAGCACGCTG GTACGAGTGGCTGGACCCGGCCATCAAGAAGACGGAGTGGACGCGCGAGGAEST: gi|10785473|gb|AV642145.1|AV642145
genomic: ATTTCGTCGCTGCTGGTGCGGAAGTCTGCCAAGCAGTGCAAAGCACGCTGgtgagcacag ... tgcgccgtagGTACGAGTGGCTGGACCCGGCCATCAAGAAGACGGAGTGGACGCGCGAGGA
EST: ATTTCGTCGCTGCTGGTGCGGAAGTCTGCCAAGCAGTGCAAAGCACGCTG GTACGAGTGGCTGGACCCGGCCATCAAGAAGACGGAGTGGACGCGCGAGGAEST: gi|10784017|gb|AV640689.1|AV640689
genomic: ATTTCGTCGCTGCTGGTGCGGAAGTCTGCCAAGCAGTGCAAAGCACGCTGgtgagcacag ... tgcgccgtagGTACGAGTGGCTGGACCCGGCCATCAAGAAGACGGAGTGGACGCGCGAGGA
EST: ATTTCGTCGCTGCTGGTGCGGAAGTCTGCCAAGCAGTGCAAAGCACGCTG GTACGAGTGGCEST: gi|10789114|gb|AV626834.1|AV626834
genomic: ATTTCGTCGCTGCTGGTGCGGAAGTCTGCCAAGCAGTGCAAAGCACGCTGgtgagcacag ... tgcgccgtagGTACGAGTGGC
EST: ATTTCGTCGCTGCTGGTGCGGAAGTCTGCCAAGCAGTGCAAAGCACGCTG GTACGAGTGGCTGGACCCGGCCATCAAGAAGACGGAGTGGACGCGCGAGGAEST: gi|10785001|gb|AV641673.1|AV641673
genomic: ATTTCGTCGCTGCTGGTGCGGAAGTCTGCCAAGCAGTGCAAAGCACGCTGgtgagcacag ... tgcgccgtagGTACGAGTGGCTGGACCCGGCCATCAAGAAGACGGAGTGGACGCGCGAGGA
EST: ATTTCGTCGCTGCTGGTGCGGAAGTCTGCCAAGCAGTGCAAAGCACGCTG GTACGAGTGGCTGGACCCGGCCATCAAGAAGACGGAGTGGACGCGCGAGGA
genomic: ATTTCGTCGCTGCTGGTGCGGAAGTCTGCCAAGCAGTGCAAAGCACGCTGgtgagcacag ... tgcgccgtagGTACGAGTGGCTGGACCCGGCCATCAAGAAGACGGAGTGGACGCGCGAGGA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tccacccgccgtgtcgacagggcatgcacagcctgtcacatcggctgcacggctgtatgacggacctagcttcacgcggcatcgcacgtctgcgccgtagGTACGAGTGGCTGGACCCGGCCATCAAGAAGACGGAGTGGACGCGCGAGGAGGATGAGAAGCTGCTGCATCTGGCAAAGCTGATGCCGTGCCAGTGGCGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT
- cacccgc
- - - - - - - - - - - -atgcaca
- - - - - - - - - - - - - - - - -tgtcaca
- - - - - - - - - - - - - - - - - - - - - - - - - - ctgtatg