1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
...ggactgaacccggtggtacgtggcaaccacgccccctttcgctcgactcgcctgcttctctcgccccctccttcaccctgctctcatcccgaccgcacagGCCTGGGCCAGCACGAGTGGGATGTGGATCTGTACGGCGAGCTGCTGGAGATCGGCGGCGGCAAGGAGCGCATGACCAAGTACTTCAAT
species | Chlamydomonas reinhardtii |
transcript | EDP03206 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: GGAGCGCGACGGCCACCGCATCAGCTTCAACGAGGCGTTCAAGCGCAAGG GCCTGGGCCAGCACGAGTGGGATGTGGATCTGTACGGCGAGCTGCTGGAGAEST: gi|9460726|gb|BE453380.1|BE453380
genomic: GGAGCGCGACGGCCACCGCATCAGCTTCAACGAGGCGTTCAAGCGCAAGGgtgcgctcgc ... gaccgcacagGCCTGGGCCAGCACGAGTGGGATGTGGATCTGTACGGCGAGCTGCTGGAGA
EST: GGAGCGCGACGGCCACCGCATCAGCTTCAACGAGGCGTTCAAGCGCAAGG GCCTGGGCCAGCACGAGTGGGATGTGGATCTGTACGGCGAGCTGCTGGAGA
genomic: GGAGCGCGACGGCCACCGCATCAGCTTCAACGAGGCGTTCAAGCGCAAGGgtgcgctcgc ... gaccgcacagGCCTGGGCCAGCACGAGTGGGATGTGGATCTGTACGGCGAGCTGCTGGAGA
actcgcctgcttctctcgccccctccttcaccctgctctcatcccgaccgcacagGCCTGGGCCAGCACGAGTGGGATGTGGATCTGTACGGCGAGCTGCTGGAGATCGGCGGCGGCAAGGAGCGCATGACCAAGTACTTCAAT
cttctctcgccccctc CT-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ggactgaacccggtggtacgtggcaaccacgccccctttcgctcgactcgcctgcttctctcgccccctccttcaccctgctctcatcccgaccgcacagGCCTGGGCCAGCACGAGTGGGATGTGGATCTGTACGGCGAGCTGCTGGAGATCGGCGGCGGCAAGGAGCGCATGACCAAGTACTTCAAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - -gtacgtg
- - - - - - - - - - - -caaccac