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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...gtggtccagcgctcgtgtggatgcccgtcgcgtgctagtcagcaccttctctctgttccgacaccacatgcgctgacaacaattctgtcttgcgcttcagGCCGCTACGTGCCCCGCGCCATCCTGATGGACCTGGAGCCCGGCACCATGGATTCCGTGCGCTCGGGCCCCTACGGCCAGATTTTCCGCCCGGACAACTT

Basic information

species Chlamydomonas reinhardtii
transcript EDP03008
intron # 2
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|161816858|gb|FC101357.1|FC101357
EST:     CGACCTGCAGCTGGAGCGCATCAACGTGTACTTCAACGAGGCCACCGGCG                         GCCGCTACGTGCCCCGCGCCATCCTGATGGACCTGGAGCCCGGCACCATGG
genomic: CGACCTGCAGCTGGAGCGCATCAACGTGTACTTCAACGAGGCCACCGGCGgtgagtcaac ... tgcgcttcagGCCGCTACGTGCCCCGCGCCATCCTGATGGACCTGGAGCCCGGCACCATGG
EST: gi|161792655|gb|FC080648.1|FC080648
EST:     CGACCTGCAGCTGGAGCGCATCAACGTGTACTTCAACGAGGCCACCGGTG                         GCCGCTACGTGCCCCGCGCCATCCTGATGGACCTGGAGCCCGGCACCATGG
genomic: CGACCTGCAGCTGGAGCGCATCAACGTGTACTTCAACGAGGCCACCGGCGgtgagtcaac ... tgcgcttcagGCCGCTACGTGCCCCGCGCCATCCTGATGGACCTGGAGCCCGGCACCATGG
EST: gi|6550612|gb|AV396396.1|AV396396
EST:     CGACCTGCAGCTGGAGCGCATCAACGTGTACTTCAACGAGGCCACCGGCG                         GCCGCTACGTGCCCCGCGCCATCCTGATGGACCTGGAGCCCGGCACCATGG
genomic: CGACCTGCAGCTGGAGCGCATCAACGTGTACTTCAACGAGGCCACCGGCGgtgagtcaac ... tgcgcttcagGCCGCTACGTGCCCCGCGCCATCCTGATGGACCTGGAGCCCGGCACCATGG
EST: gi|22071268|gb|BQ820606.1|BQ820606
EST:     CGACCTGCAGCTGGAGCGCATCAACGTGTACTTCAACGAGGCCACCGGCG                         GCCGCTACGTGCCCCGCGCCATCCTGATGGACCTGGAGCCCGGCACCATGG
genomic: CGACCTGCAGCTGGAGCGCATCAACGTGTACTTCAACGAGGCCACCGGCGgtgagtcaac ... tgcgcttcagGCCGCTACGTGCCCCGCGCCATCCTGATGGACCTGGAGCCCGGCACCATGG
EST: gi|161810124|gb|FC097733.1|FC097733
EST:     CGACCTGCAGCTGGAGCGCATCAACGTGTACTTCAACGAGGCCACCGGCG                         GCCGCTACGTGCCCCGCGCCATCCTGATGGACCTGGAGCCCGGCACCATGG
genomic: CGACCTGCAGCTGGAGCGCATCAACGTGTACTTCAACGAGGCCACCGGCGgtgagtcaac ... tgcgcttcagGCCGCTACGTGCCCCGCGCCATCCTGATGGACCTGGAGCCCGGCACCATGG
EST: gi|161792863|gb|FC082117.1|FC082117
EST:     CGACCTGCAGCTGGAGCGCATCAACGTGTACTTCAACGAGGCCACCGGCG                         GCCGCTACGTGCCCCGCGCCATCCTGATGGACCTGGAGCCCGGCACCATGG
genomic: CGACCTGCAGCTGGAGCGCATCAACGTGTACTTCAACGAGGCCACCGGCGgtgagtcaac ... tgcgcttcagGCCGCTACGTGCCCCGCGCCATCCTGATGGACCTGGAGCCCGGCACCATGG
EST: gi|6540782|gb|AV386566.1|AV386566
EST:     CGACCTGCAGCTGGAGCGCATCAACGTGTACTTCAACGAGGCCACCGGCG                         GCCGCTACGTGCCCCGCGCCATCCTGATGGACCTGGAGCCCGGCACCATGG
genomic: CGACCTGCAGCTGGAGCGCATCAACGTGTACTTCAACGAGGCCACCGGCGgtgagtcaac ... tgcgcttcagGCCGCTACGTGCCCCGCGCCATCCTGATGGACCTGGAGCCCGGCACCATGG
EST: gi|161807276|gb|FC098051.1|FC098051
EST:     CGACCTGCAGCTGGAGCGCATCAACGTGTACTTCAACGAGGCCACCGGCG                         GCCGCTACGTGCCCCGCGCCATCCTGATGGACCTGGAGCCCGGCACCATGG
genomic: CGACCTGCAGCTGGAGCGCATCAACGTGTACTTCAACGAGGCCACCGGCGgtgagtcaac ... tgcgcttcagGCCGCTACGTGCCCCGCGCCATCCTGATGGACCTGGAGCCCGGCACCATGG
EST: gi|6541998|gb|AV387782.1|AV387782
EST:     CGACCTGCAGCTGGAGCGCATCAACGTGTACTTCAACGAGGCCACCGGCG                         GCCGCTACGTGCCCCGCGCCATCCTGATGGACCTGGAGCCCGGCACCATGG
genomic: CGACCTGCAGCTGGAGCGCATCAACGTGTACTTCAACGAGGCCACCGGCGgtgagtcaac ... tgcgcttcagGCCGCTACGTGCCCCGCGCCATCCTGATGGACCTGGAGCCCGGCACCATGG
EST: gi|161823009|gb|FC106579.1|FC106579
EST:     CGACCTGCAGCTGGAGCGCATCAACGTGTACTTCAACGAGGCCACCGGCG                         GCCGCTACGTGCCCCGCGCCATCCTGATGGACCTGGAGCCCGGCACCATGG
genomic: CGACCTGCAGCTGGAGCGCATCAACGTGTACTTCAACGAGGCCACCGGCGgtgagtcaac ... tgcgcttcagGCCGCTACGTGCCCCGCGCCATCCTGATGGACCTGGAGCCCGGCACCATGG
EST: gi|49460873|gb|BP088786.1|BP088786
EST:     CGACCTGCAGCTGGAGCGCATCAACGTGTACTTCAACGAGGCCACCGGCG                         GCCGCTACGTGCCCCGCGCCATCCTGATGGACCTGGAGCCCGGCACCATGG
genomic: CGACCTGCAGCTGGAGCGCATCAACGTGTACTTCAACGAGGCCACCGGCGgtgagtcaac ... tgcgcttcagGCCGCTACGTGCCCCGCGCCATCCTGATGGACCTGGAGCCCGGCACCATGG
EST: gi|49467093|gb|BP095006.1|BP095006
EST:     CGACCTGCAGCTGGAGCGCATCAACGTGTACTTCAACGAGGCCACCGGCG                         GCCGCTACGTGCCCCGCGCCATCCTGATGGACCTGGAGCCCGGCACCATGG
genomic: CGACCTGCAGCTGGAGCGCATCAACGTGTACTTCAACGAGGCCACCGGCGgtgagtcaac ... tgcgcttcagGCCGCTACGTGCCCCGCGCCATCCTGATGGACCTGGAGCCCGGCACCATGG
EST: gi|10786507|gb|AV643179.1|AV643179
EST:     CGACCTGCAGCTGGAGCGCATCAACGTGTACTTCAACGAGGCCACCGGCG                         GCCGCTACGTGCCCCGCGCCATCCTGATGGACCTGGAGCCCGGCACCATGG
genomic: CGACCTGCAGCTGGAGCGCATCAACGTGTACTTCAACGAGGCCACCGGCGgtgagtcaac ... tgcgcttcagGCCGCTACGTGCCCCGCGCCATCCTGATGGACCTGGAGCCCGGCACCATGG
EST: gi|7686898|gb|AW757546.1|AW757546
EST:     CGACCTGCAGCTGGAGCGCATCAACGTGTACTTCAACGAGGCCACCGGCG                         GCCGCTACGTGCCCCGCGCCATCCTGATGGACCTGGAGCCCGGCACCATGG
genomic: CGACCTGCAGCTGGAGCGCATCAACGTGTACTTCAACGAGGCCACCGGCGgtgagtcaac ... tgcgcttcagGCCGCTACGTGCCCCGCGCCATCCTGATGGACCTGGAGCCCGGCACCATGG
EST: gi|49468802|gb|BP096663.1|BP096663
EST:     CGACCTGCAGCTGGAGCGCATCAACGTGTACTTCAACGAGGCCACCGGCG                         GCCGCTACGTGCCCCGCGCCATCCTGATGGACCTGGAGCCCGGCACCATGG
genomic: CGACCTGCAGCTGGAGCGCATCAACGTGTACTTCAACGAGGCCACCGGCGgtgagtcaac ... tgcgcttcagGCCGCTACGTGCCCCGCGCCATCCTGATGGACCTGGAGCCCGGCACCATGG
EST: gi|10774816|gb|AV625639.1|AV625639
EST:     CGACCTGCAGCTGGAGCGCATCAACGTGTACTTCAACGAGGCCACCGGCG                         GCCGCTACGTGCCCCGCGCCATCCTGATGGACCTGGAGCCCGGCACCATGG
genomic: CGACCTGCAGCTGGAGCGCATCAACGTGTACTTCAACGAGGCCACCGGCGgtgagtcaac ... tgcgcttcagGCCGCTACGTGCCCCGCGCCATCCTGATGGACCTGGAGCCCGGCACCATGG
EST: gi|49469508|gb|BP097369.1|BP097369
EST:     CGACCTGCAGCTGGAGCGCATCAACGTGTACTTCAACGAGGCCACCGGCG                         GCCGCTACGTGCCCCGCGCCATCCTGATGGACCTGGAGCCCGGCACCATGG
genomic: CGACCTGCAGCTGGAGCGCATCAACGTGTACTTCAACGAGGCCACCGGCGgtgagtcaac ... tgcgcttcagGCCGCTACGTGCCCCGCGCCATCCTGATGGACCTGGAGCCCGGCACCATGG
EST: gi|7413406|gb|AW652160.1|AW652160
EST:     CGACCTGCAGCTGGAGCGCATCAACGTGTACTTCAACGAGGCCACCGGCG                         GCCGCTACGTGCCCCGCGCCATCCTGATGGACCTGGAGCCCGGCACCATGG
genomic: CGACCTGCAGCTGGAGCGCATCAACGTGTACTTCAACGAGGCCACCGGCGgtgagtcaac ... tgcgcttcagGCCGCTACGTGCCCCGCGCCATCCTGATGGACCTGGAGCCCGGCACCATGG
EST: gi|161794488|gb|FC080791.1|FC080791
EST:     CGACCTGCAGCTGGAGCGCATCAACGTGTACTTCAACGAGGCCACCGGTG                         GCCGCTACGTGCCCCGCGCCATCCTGATGGACCTGGAGCCCGGCACCATGG
genomic: CGACCTGCAGCTGGAGCGCATCAACGTGTACTTCAACGAGGCCACCGGCGgtgagtcaac ... tgcgcttcagGCCGCTACGTGCCCCGCGCCATCCTGATGGACCTGGAGCCCGGCACCATGG
EST: gi|49468580|gb|BP096441.1|BP096441
EST:     CGACCTGCAGCTGGAGCGCATCAACGTGTACTTCAACGAGGCCACCGGCG                         GCCGCTACGTGCCCCGCGCCATCCTGATGGACCTGGAGCCCGGCACCATGG
genomic: CGACCTGCAGCTGGAGCGCATCAACGTGTACTTCAACGAGGCCACCGGCGgtgagtcaac ... tgcgcttcagGCCGCTACGTGCCCCGCGCCATCCTGATGGACCTGGAGCCCGGCACCATGG
EST: gi|161795612|gb|FC085074.1|FC085074
EST:     CGACCTGCAGCTGGAGCGCATCAACGTGTACTTCAACGAGGCCACCGGCG                         GCCGCTACGTGCCCCGCGCCATCCTGATGGACCTGGAGCCCGGCACCATGG
genomic: CGACCTGCAGCTGGAGCGCATCAACGTGTACTTCAACGAGGCCACCGGCGgtgagtcaac ... tgcgcttcagGCCGCTACGTGCCCCGCGCCATCCTGATGGACCTGGAGCCCGGCACCATGG
EST: gi|22071771|gb|BQ821109.1|BQ821109
EST:     CGACCTGCAGCTGGAGCGCATCAACGTGTACTTCAACGAGGCCACCGGCG                         GCCGCTACGTGCCCCGCGCCATCCTGATGGACCTGGAGCCCGGCACCATGG
genomic: CGACCTGCAGCTGGAGCGCATCAACGTGTACTTCAACGAGGCCACCGGCGgtgagtcaac ... tgcgcttcagGCCGCTACGTGCCCCGCGCCATCCTGATGGACCTGGAGCCCGGCACCATGG
EST: gi|161792933|gb|FC082187.1|FC082187
EST:     CGACCTGCAGCTGGAGCGCATCAACGTGTACTTCAACGAGGCCACCGGTG                         GCCGCTACGTGCCCCGCGCCATCCTGATGGACCTGGAGCCCGGCACCATGG
genomic: CGACCTGCAGCTGGAGCGCATCAACGTGTACTTCAACGAGGCCACCGGCGgtgagtcaac ... tgcgcttcagGCCGCTACGTGCCCCGCGCCATCCTGATGGACCTGGAGCCCGGCACCATGG
EST: gi|49463896|gb|BP091809.1|BP091809
EST:     CGACCTGCAGCTGGAGCGCATCAACGTGTACTTCAACGAGGCCACCGGCG                         GCCGCTACGTGCCCCGCGCCATCCTGATGGACCTGGAGCCCGGCACCATGG
genomic: CGACCTGCAGCTGGAGCGCATCAACGTGTACTTCAACGAGGCCACCGGCGgtgagtcaac ... tgcgcttcagGCCGCTACGTGCCCCGCGCCATCCTGATGGACCTGGAGCCCGGCACCATGG
EST: gi|7593402|gb|AW707653.1|AW707653
EST:     CGACCTGCAGCTGGAGCGCATCAACGTGTACTTCAACGAGGCCACCGGCG                         GCCGCTACGTGCCCCGCGCCATCCTGATGGACCTGGAGCCCGGCACCATGG
genomic: CGACCTGCAGCTGGAGCGCATCAACGTGTACTTCAACGAGGCCACCGGCGgtgagtcaac ... tgcgcttcagGCCGCTACGTGCCCCGCGCCATCCTGATGGACCTGGAGCCCGGCACCATGG
EST: gi|22059195|gb|BQ813302.1|BQ813302
EST:     CGACCTGCAGCTGGAGCGCATCAACGTGTACTTCAACGAGGCCACCGGCG                         GCCGCTACGTGCCCCGCGCCATCCTGATGGACCTGGAGCCCGGCACCATGG
genomic: CGACCTGCAGCTGGAGCGCATCAACGTGTACTTCAACGAGGCCACCGGCGgtgagtcaac ... tgcgcttcagGCCGCTACGTGCCCCGCGCCATCCTGATGGACCTGGAGCCCGGCACCATGG
EST: gi|49460940|gb|BP088853.1|BP088853
EST:     CGACCTGCAGCTGGAGCGCATCAACGTGTACTTCAACGAGGCCACCGGCG                         GCCGCTACGTGCCCCGCGCCATCCTGATGGACCTGGAGCCCGGCACCATGG
genomic: CGACCTGCAGCTGGAGCGCATCAACGTGTACTTCAACGAGGCCACCGGCGgtgagtcaac ... tgcgcttcagGCCGCTACGTGCCCCGCGCCATCCTGATGGACCTGGAGCCCGGCACCATGG
EST: gi|22065210|gb|BQ816245.1|BQ816245
EST:     CGACCTGCAGCTGGAGCGCATCAACGTGTACTTCAACGAGGCCACCGGCG                         GCCGCTACGTGCCCCGCGCCATCCTGATGGACCTGGAGCCCGGCACCATGG
genomic: CGACCTGCAGCTGGAGCGCATCAACGTGTACTTCAACGAGGCCACCGGCGgtgagtcaac ... tgcgcttcagGCCGCTACGTGCCCCGCGCCATCCTGATGGACCTGGAGCCCGGCACCATGG
EST: gi|161799025|gb|FC084689.1|FC084689
EST:     CGACCTGCAGCTGGAGCGCATCAACGTGTACTTCAACGAGGCCACCGGTG                         GCCGCTACGTGCCCCGCGCCATCCTGATGGACCTGGAGCCCGGCACCATGG
genomic: CGACCTGCAGCTGGAGCGCATCAACGTGTACTTCAACGAGGCCACCGGCGgtgagtcaac ... tgcgcttcagGCCGCTACGTGCCCCGCGCCATCCTGATGGACCTGGAGCCCGGCACCATGG
EST: gi|161819709|gb|FC106730.1|FC106730
EST:     CGACCTGCAGCTGGAGCGCATCAACGTGTACTTCAACGAGGCCACCGGCG                         GCCGCTACGTGCCCCGCGCCATCCTGATGGACCTGGAGCCCGGCACCATGG
genomic: CGACCTGCAGCTGGAGCGCATCAACGTGTACTTCAACGAGGCCACCGGCGgtgagtcaac ... tgcgcttcagGCCGCTACGTGCCCCGCGCCATCCTGATGGACCTGGAGCCCGGCACCATGG
EST: gi|22075288|gb|BQ824064.1|BQ824064
EST:     CGACCTGCAGCTGGAGCGCATCAACGTGTACTTCAACGAGGCCACCGGCG                         GCCGCTACGTGCCCCGCGCCATCCTGATGGACCTGGAGCCCGGCACCATGG
genomic: CGACCTGCAGCTGGAGCGCATCAACGTGTACTTCAACGAGGCCACCGGCGgtgagtcaac ... tgcgcttcagGCCGCTACGTGCCCCGCGCCATCCTGATGGACCTGGAGCCCGGCACCATGG
EST: gi|49461166|gb|BP089079.1|BP089079
EST:     CGACCTGCAGCTGGAGCGCATCAACGTGTACTTCAACGAGGCCACCGGCG                         GCCGCTACGTGCCCCGCGCCATCCTGATGGACCTGGAGCCCGGCACCATGG
genomic: CGACCTGCAGCTGGAGCGCATCAACGTGTACTTCAACGAGGCCACCGGCGgtgagtcaac ... tgcgcttcagGCCGCTACGTGCCCCGCGCCATCCTGATGGACCTGGAGCCCGGCACCATGG
EST: gi|7687217|gb|AW757865.1|AW757865
EST:     CGACCTGCAGCTGGAGCGCATCAACGTGTACTTCAACGAGGCCACCGGCG                         GCCGCTACGTGCCCCGCGCCATCCTGATGGACCTGGAGCCCGGCACCATGG
genomic: CGACCTGCAGCTGGAGCGCATCAACGTGTACTTCAACGAGGCCACCGGCGgtgagtcaac ... tgcgcttcagGCCGCTACGTGCCCCGCGCCATCCTGATGGACCTGGAGCCCGGCACCATGG
EST: gi|161805566|gb|FC090622.1|FC090622
EST:     CGACCTGCAGCTGGAGCGCATCAACGTGTACTTCAACGAGGCCACCGGTG                         GCCGCTACGTGCCCCGCGCCATCCTGATGGACCTGGAGCCCGGCACCATGG
genomic: CGACCTGCAGCTGGAGCGCATCAACGTGTACTTCAACGAGGCCACCGGCGgtgagtcaac ... tgcgcttcagGCCGCTACGTGCCCCGCGCCATCCTGATGGACCTGGAGCCCGGCACCATGG
EST: gi|49464249|gb|BP092162.1|BP092162
EST:     CGACCTGCAGCTGGAGCGCATCAACGTGTACTTCAACGAGGCCACCGGCG                         GCCGCTACGTGCCCCGCGCCATCCTGATGGACCTGGAGCCCGGCACCATGG
genomic: CGACCTGCAGCTGGAGCGCATCAACGTGTACTTCAACGAGGCCACCGGCGgtgagtcaac ... tgcgcttcagGCCGCTACGTGCCCCGCGCCATCCTGATGGACCTGGAGCCCGGCACCATGG
EST: gi|49469973|gb|BP097834.1|BP097834
EST:     CGACCTGCAGCTGGAGCGCATCAACGTGTACTTCAACGAGGCCACCGGCG                         GCCGCTACGTGCCCCGCGCCATCCTGATGGACCTGGA
genomic: CGACCTGCAGCTGGAGCGCATCAACGTGTACTTCAACGAGGCCACCGGCGgtgagtcaac ... tgcgcttcagGCCGCTACGTGCCCCGCGCCATCCTGATGGACCTGGA
EST: gi|49460098|gb|BP088011.1|BP088011
EST:     CGACCTGCAGCTGGAGCGCATCAACGTGTACTTCAACGAGGCCACCGGCG                         GCCGCTACGTGCCCCGCGCCATCCTGATGGACCTGGA
genomic: CGACCTGCAGCTGGAGCGCATCAACGTGTACTTCAACGAGGCCACCGGCGgtgagtcaac ... tgcgcttcagGCCGCTACGTGCCCCGCGCCATCCTGATGGACCTGGA
EST: gi|161807353|gb|FC094553.1|FC094553
EST:     CGACCTGCAGCTGGAGCGCATCAACGTGTACTTCAACGAGGCCACCGGCG                         GCCGCTACGTGCCCCGCGCCATCCTGATGGACCTGGAGCCCGGCACCATGG
genomic: CGACCTGCAGCTGGAGCGCATCAACGTGTACTTCAACGAGGCCACCGGCGgtgagtcaac ... tgcgcttcagGCCGCTACGTGCCCCGCGCCATCCTGATGGACCTGGAGCCCGGCACCATGG
EST: gi|161807881|gb|FC096199.1|FC096199
EST:     CGACCTGCAGCTGGAGCGCATCAACGTGTACTTCAACGAGGCCACCGGTG                         GCCGCTACGTGCCCCGCGCCATCCTGATGGACCTGGAGCCCGGCACCATGG
genomic: CGACCTGCAGCTGGAGCGCATCAACGTGTACTTCAACGAGGCCACCGGCGgtgagtcaac ... tgcgcttcagGCCGCTACGTGCCCCGCGCCATCCTGATGGACCTGGAGCCCGGCACCATGG
EST: gi|161804770|gb|FC089163.1|FC089163
EST:     CGACCTGCAGCTGGAGCGCATCAACGTGTACTTCAACGAGGCCACCGGCG                         GCCGCTACGTGCCCCGCGCCATCCTGATGGACCTGGAGCCCGGCACCATGG
genomic: CGACCTGCAGCTGGAGCGCATCAACGTGTACTTCAACGAGGCCACCGGCGgtgagtcaac ... tgcgcttcagGCCGCTACGTGCCCCGCGCCATCCTGATGGACCTGGAGCCCGGCACCATGG
EST: gi|7709437|gb|AW772855.1|AW772855
EST:     CGACCTGCAGCTGGAGCGCATCAACGTGTACTTCAACGAGGCCACCGGCG                         GCCGCTACGTGCCCCGCGCCATCCTGATGGACCTGGAGCCCGGCACCATGG
genomic: CGACCTGCAGCTGGAGCGCATCAACGTGTACTTCAACGAGGCCACCGGCGgtgagtcaac ... tgcgcttcagGCCGCTACGTGCCCCGCGCCATCCTGATGGACCTGGAGCCCGGCACCATGG
EST: gi|7413327|gb|AW652081.1|AW652081
EST:     CGACCTGCAGCTGGAGCGCATCAACGTGTACTTCAACGAGGCCACCGGCG                         GCCGCTACGTGCCCCGCGCCATCCTGATGGACCTGGAGCCCGGCACCATGG
genomic: CGACCTGCAGCTGGAGCGCATCAACGTGTACTTCAACGAGGCCACCGGCGgtgagtcaac ... tgcgcttcagGCCGCTACGTGCCCCGCGCCATCCTGATGGACCTGGAGCCCGGCACCATGG
EST: gi|10780931|gb|AV637611.1|AV637611
EST:     CGACCTGCAGCTGGAGCGCATCAACGTGTACTTCAACGAGGCCACCGGCG                         GCCGCTACGTGCCCCGCGCCATCCTGATGGACCTGGAGCCCGGCACCATGG
genomic: CGACCTGCAGCTGGAGCGCATCAACGTGTACTTCAACGAGGCCACCGGCGgtgagtcaac ... tgcgcttcagGCCGCTACGTGCCCCGCGCCATCCTGATGGACCTGGAGCCCGGCACCATGG
EST: gi|49461185|gb|BP089098.1|BP089098
EST:     CGACCTGCAGCTGGAGCGCATCAACGTGTACTTCAACGAGGCCACCGGCG                         GCCGCTACGTGCCCCGCGCCATCCTGATGGACCTGGAGCCCGGCACCATGG
genomic: CGACCTGCAGCTGGAGCGCATCAACGTGTACTTCAACGAGGCCACCGGCGgtgagtcaac ... tgcgcttcagGCCGCTACGTGCCCCGCGCCATCCTGATGGACCTGGAGCCCGGCACCATGG
EST: gi|10773249|gb|AV624072.1|AV624072
EST:     CGACCTGCAGCTGGAGCGCATCAACGTGTACTTCAACGAGGCCACCGGCG                         GCCGCTACGTGCCCCGCGCCATCCTGATGGACCTGGAGCCCGGCACCATGG
genomic: CGACCTGCAGCTGGAGCGCATCAACGTGTACTTCAACGAGGCCACCGGCGgtgagtcaac ... tgcgcttcagGCCGCTACGTGCCCCGCGCCATCCTGATGGACCTGGAGCCCGGCACCATGG
EST: gi|161814709|gb|FC102826.1|FC102826
EST:     CGACCTGCAGCTGGAGCGCATCAACGTGTACTTCAACGAGGCCACCGGCG                         GCCGCTACGTGCCCCGCGCCATCCTGATGGACCTGGAGCCCGGCACCATGG
genomic: CGACCTGCAGCTGGAGCGCATCAACGTGTACTTCAACGAGGCCACCGGCGgtgagtcaac ... tgcgcttcagGCCGCTACGTGCCCCGCGCCATCCTGATGGACCTGGAGCCCGGCACCATGG
EST: gi|10772790|gb|AV623613.1|AV623613
EST:     CGACCTGCAGCTGGAGCGCATCAACGTGTACTTCAACGAGGCCACCGGCG                         GCCGCTACGTGCCCCGCGCCATCCTGATGGACCTGGAGCCCGGCACCATGG
genomic: CGACCTGCAGCTGGAGCGCATCAACGTGTACTTCAACGAGGCCACCGGCGgtgagtcaac ... tgcgcttcagGCCGCTACGTGCCCCGCGCCATCCTGATGGACCTGGAGCCCGGCACCATGG
EST: gi|161807546|gb|FC099777.1|FC099777
EST:     TGCAGCTGGAGCGCATCAACGTGTACTTCAACGAGGCCACCGGTG                         GCCGCTACGTGCCCCGCGCCATCCTGATGGACCTGGAGCCCGGCACCATGG
genomic: TGCAGCTGGAGCGCATCAACGTGTACTTCAACGAGGCCACCGGCGgtgagtcaac ... tgcgcttcagGCCGCTACGTGCCCCGCGCCATCCTGATGGACCTGGAGCCCGGCACCATGG
EST: gi|22070265|gb|BQ819666.1|BQ819666
EST:     CGACCTGCAGCTGGAGCGCATCAACGTGTACTTCAACGAGGCCACCGGCG                         GCCGCTACGTGCCCCGCGCCATCCTGATGGACCTGGAGCCCGGCACCATGG
genomic: CGACCTGCAGCTGGAGCGCATCAACGTGTACTTCAACGAGGCCACCGGCGgtgagtcaac ... tgcgcttcagGCCGCTACGTGCCCCGCGCCATCCTGATGGACCTGGAGCCCGGCACCATGG
EST: gi|10785357|gb|AV642029.1|AV642029
EST:     CGACCTGCAGCTGGAGCGCATCAACGTGTACTTCAACGAGGCCACCGGCG                         GCCGCTACGTGCCCCGCGC
genomic: CGACCTGCAGCTGGAGCGCATCAACGTGTACTTCAACGAGGCCACCGGCGgtgagtcaac ... tgcgcttcagGCCGCTACGTGCCCCGCGC
EST: gi|10787306|gb|AV643978.1|AV643978
EST:     CGACCTGCAGCTGGAGCGCATCAACGTGTACTTCAACGAGGCCACCGGCG                         GCCGCTACGTGCCCCGCGCCATCCTGATGGACCTGGAGCCCGGCACCATGG
genomic: CGACCTGCAGCTGGAGCGCATCAACGTGTACTTCAACGAGGCCACCGGCGgtgagtcaac ... tgcgcttcagGCCGCTACGTGCCCCGCGCCATCCTGATGGACCTGGAGCCCGGCACCATGG
EST: gi|6543905|gb|AV389689.1|AV389689
EST:     CTTCAACGAGGCCACCGGCG                         GCCGCTACGTGCCCCGCGCCATCCTGATGGACCTGGAGCCCGGCACCATGG
genomic: CTTCAACGAGGCCACCGGCGgtgagtcaac ... tgcgcttcagGCCGCTACGTGCCCCGCGCCATCCTGATGGACCTGGAGCCCGGCACCATGG
EST: gi|49469063|gb|BP096924.1|BP096924
EST:     CGACCTGCAGCTGGAGCGCATCAACGTGTACTTCAACGAGGCCACCGGCG                         GCCGCTACGTGCCCCGCGCCATCCTGATGGACCTGGAGCCCGGCACCATGG
genomic: CGACCTGCAGCTGGAGCGCATCAACGTGTACTTCAACGAGGCCACCGGCGgtgagtcaac ... tgcgcttcagGCCGCTACGTGCCCCGCGCCATCCTGATGGACCTGGAGCCCGGCACCATGG
EST: gi|16073099|gb|BI875095.1|BI875095
EST:     CGACCTGCAGCTGGAGCGCATCAACGTGTACTTCAACGAGGCCACCGGCG                         GCCGCTACGTGCCCCGCGCCATCCTGATGGACCTGGAGCCCGGCACCATGG
genomic: CGACCTGCAGCTGGAGCGCATCAACGTGTACTTCAACGAGGCCACCGGCGgtgagtcaac ... tgcgcttcagGCCGCTACGTGCCCCGCGCCATCCTGATGGACCTGGAGCCCGGCACCATGG
EST: gi|7687402|gb|AW758050.1|AW758050
EST:     CGACCTGCAGCTGGAGCGCATCAACGTGTACTTCAACGAGGCCACCGGCG                         GCCGCTACGTGCCCCGCGCCATCCTGATGGACCTGGAGCCCGGCACCATGG
genomic: CGACCTGCAGCTGGAGCGCATCAACGTGTACTTCAACGAGGCCACCGGCGgtgagtcaac ... tgcgcttcagGCCGCTACGTGCCCCGCGCCATCCTGATGGACCTGGAGCCCGGCACCATGG
EST: gi|7686990|gb|AW757638.1|AW757638
EST:     CGACCTGCAGCTGGAGCGCATCAACGTGTACTTCAACGAGGCCACCGGCG                         GCCGCTACGTGCCCCGCGCCATCCTGATGGACCTGGAGCCCGGCACCATGG
genomic: CGACCTGCAGCTGGAGCGCATCAACGTGTACTTCAACGAGGCCACCGGCGgtgagtcaac ... tgcgcttcagGCCGCTACGTGCCCCGCGCCATCCTGATGGACCTGGAGCCCGGCACCATGG
EST: gi|161805926|gb|FC091983.1|FC091983
EST:     CGACCTGCAGCTGGAGCGCATCAACGTGTACTTCAACGAGGCCACCGGCG                         GCCGCTACGTGCCCCGCGCCATCCTGATGGACCTGGAGCCCGGCACCATGG
genomic: CGACCTGCAGCTGGAGCGCATCAACGTGTACTTCAACGAGGCCACCGGCGgtgagtcaac ... tgcgcttcagGCCGCTACGTGCCCCGCGCCATCCTGATGGACCTGGAGCCCGGCACCATGG
EST: gi|10782694|gb|AV639366.1|AV639366
EST:     CGACCTGCAGCTGGAGCGCATCAACGTGTACTTCAACGAGGCCACCGGCG                         GCCGCTACGTGCCCCGCGCCATCCTGATGGACCTGGAGCCCGGCACCATGG
genomic: CGACCTGCAGCTGGAGCGCATCAACGTGTACTTCAACGAGGCCACCGGCGgtgagtcaac ... tgcgcttcagGCCGCTACGTGCCCCGCGCCATCCTGATGGACCTGGAGCCCGGCACCATGG
EST: gi|161790120|gb|FC076899.1|FC076899
EST:     CGACCTGCAGCTGGAGCGCATCAACGTGTACTTCAACGAGGCCACCGGCG                         GCCGCTACGTGCCCCGCGCCATCCTGATGGACCTGGAGCCCGGCACCATGG
genomic: CGACCTGCAGCTGGAGCGCATCAACGTGTACTTCAACGAGGCCACCGGCGgtgagtcaac ... tgcgcttcagGCCGCTACGTGCCCCGCGCCATCCTGATGGACCTGGAGCCCGGCACCATGG
EST: gi|49466311|gb|BP094224.1|BP094224
EST:     CGACCTGCAGCTGGAGCGCATCAACGTGTACTTCAACGAGGCCACCGGTG                         GCCGCTACGTGCCCCGCGCCATCCTGATGGACCTGGAGCCTGGCACCATGG
genomic: CGACCTGCAGCTGGAGCGCATCAACGTGTACTTCAACGAGGCCACCGGCGgtgagtcaac ... tgcgcttcagGCCGCTACGTGCCCCGCGCCATCCTGATGGACCTGGAGCCCGGCACCATGG
EST: gi|49461024|gb|BP088937.1|BP088937
EST:     CGACCTGCAGCTGGAGCGCATCAACGTGTACTTCAACGAGGCCACCGGCG                         GCCGCTACGTGCCCCGCGCCATCCTGATGGACCTGGAGCCCGGCACCATGG
genomic: CGACCTGCAGCTGGAGCGCATCAACGTGTACTTCAACGAGGCCACCGGCGgtgagtcaac ... tgcgcttcagGCCGCTACGTGCCCCGCGCCATCCTGATGGACCTGGAGCCCGGCACCATGG
EST: gi|10786099|gb|AV642771.1|AV642771
EST:     CGACCTGCAGCTGGAGCGCATCAACGTGTACTTCAACGAGGCCACCGGCG                         GCCGCTACGTGCCCCGCGCCATCCTGATGGACCTGGAGCCCGGCACCATGG
genomic: CGACCTGCAGCTGGAGCGCATCAACGTGTACTTCAACGAGGCCACCGGCGgtgagtcaac ... tgcgcttcagGCCGCTACGTGCCCCGCGCCATCCTGATGGACCTGGAGCCCGGCACCATGG
EST: gi|49470151|gb|BP098012.1|BP098012
EST:     CGACCTGCAGCTGGAGCGCATCAACGTGTACTTCAACGAGGCCACCGGCG                         GCCGCTACGTGCCCCGCGCCATCCTGATGGACCTGGAGCCCGGCACCATGG
genomic: CGACCTGCAGCTGGAGCGCATCAACGTGTACTTCAACGAGGCCACCGGCGgtgagtcaac ... tgcgcttcagGCCGCTACGTGCCCCGCGCCATCCTGATGGACCTGGAGCCCGGCACCATGG
EST: gi|161802383|gb|FC092129.1|FC092129
EST:     CGACCTGCAGCTGGAGCGCATCAACGTGTACTTCAACGAGGCCACCGGCG                         GCCGCTACGTGCCCCGCGCCATCCTGATGGACCTGGAGCCCGGCACCATGG
genomic: CGACCTGCAGCTGGAGCGCATCAACGTGTACTTCAACGAGGCCACCGGCGgtgagtcaac ... tgcgcttcagGCCGCTACGTGCCCCGCGCCATCCTGATGGACCTGGAGCCCGGCACCATGG
EST: gi|49470684|gb|BP098545.1|BP098545
EST:     CGACCTGCAGCTGGAGCGCATCAACGTGTACTTCAACGAGGCCACCGGCG                         GCCGCTACGTGCCCCGCGCCATCCTGATGGACCTGGAGCCCGGCACCATGG
genomic: CGACCTGCAGCTGGAGCGCATCAACGTGTACTTCAACGAGGCCACCGGCGgtgagtcaac ... tgcgcttcagGCCGCTACGTGCCCCGCGCCATCCTGATGGACCTGGAGCCCGGCACCATGG
EST: gi|16071767|gb|BI873763.1|BI873763
EST:     CGACCTGCAGCTGGAGCGCATCAACGTGTACTTCAACGAGGCCACCGGCG                         GCCGCTACGTGCCCCGCGCCATCCTGATGGACCTGGAGCCCGGCACCATGG
genomic: CGACCTGCAGCTGGAGCGCATCAACGTGTACTTCAACGAGGCCACCGGCGgtgagtcaac ... tgcgcttcagGCCGCTACGTGCCCCGCGCCATCCTGATGGACCTGGAGCCCGGCACCATGG
EST: gi|6540856|gb|AV386640.1|AV386640
EST:     CGACCTGCAGCTGGAGCGCATCAACGTGTACTTCAACGAGGCCACCGGCG                         GCCGCTACGTGCCCCGCGCCATCCTGATGGACCTGGAGCCCGGCACCATGG
genomic: CGACCTGCAGCTGGAGCGCATCAACGTGTACTTCAACGAGGCCACCGGCGgtgagtcaac ... tgcgcttcagGCCGCTACGTGCCCCGCGCCATCCTGATGGACCTGGAGCCCGGCACCATGG
EST: gi|49459127|gb|BP087040.1|BP087040
EST:     CGACCTGCAGCTGGAGCGCATCAACGTGTACTTCAACGAGGCCACCGGCG                         GCCGCTACGTGCCCCGCGCCATCCTGATGGACCTGGAGCCCGGCACCATGG
genomic: CGACCTGCAGCTGGAGCGCATCAACGTGTACTTCAACGAGGCCACCGGCGgtgagtcaac ... tgcgcttcagGCCGCTACGTGCCCCGCGCCATCCTGATGGACCTGGAGCCCGGCACCATGG
EST: gi|49469850|gb|BP097711.1|BP097711
EST:     CGACCTGCAGCTGGAGCGCATCAACGTGTACTTCAACGAGGCCACCGGCG                         GCCGCTACGTGCCCCGCGCCATCCTGATGGACCTGGAGCCCGGCACCATGG
genomic: CGACCTGCAGCTGGAGCGCATCAACGTGTACTTCAACGAGGCCACCGGCGgtgagtcaac ... tgcgcttcagGCCGCTACGTGCCCCGCGCCATCCTGATGGACCTGGAGCCCGGCACCATGG
EST: gi|49469735|gb|BP097596.1|BP097596
EST:     CGACCTGCAGCTGGAGCGCATCAACGTGTACTTCAACGAGGCCACCGGCG                         GCCGCTACGTGCCCCGCGCCATCCTGATGGACCTGGAGCCCGGCACCATGG
genomic: CGACCTGCAGCTGGAGCGCATCAACGTGTACTTCAACGAGGCCACCGGCGgtgagtcaac ... tgcgcttcagGCCGCTACGTGCCCCGCGCCATCCTGATGGACCTGGAGCCCGGCACCATGG
EST: gi|10771996|gb|AV622819.1|AV622819
EST:     CGACCTGCAGCTGGAGCGCATCAACGTGTACTTCAACGAGGCCACCGGCG                         GCCGCTACGTGCCCCGCGCCATCCTGATGGACCTGGAGCCCGGCACCATGG
genomic: CGACCTGCAGCTGGAGCGCATCAACGTGTACTTCAACGAGGCCACCGGCGgtgagtcaac ... tgcgcttcagGCCGCTACGTGCCCCGCGCCATCCTGATGGACCTGGAGCCCGGCACCATGG
EST: gi|6545299|gb|AV391083.1|AV391083
EST:     CGACCTGCAGCTGGAGCGCATCAACGTGTACTTCAACGAGGCCACCGGCG                         GCCGCTACGTGCCCCGCGCCATCCTGATGGACCTGGAGCCCGGCACCATGG
genomic: CGACCTGCAGCTGGAGCGCATCAACGTGTACTTCAACGAGGCCACCGGCGgtgagtcaac ... tgcgcttcagGCCGCTACGTGCCCCGCGCCATCCTGATGGACCTGGAGCCCGGCACCATGG
EST: gi|10191117|gb|BE761193.1|BE761193
EST:     GAGGCCACCGGCG                         GCCGCTACGTGCCCCGCGCCATCCTGATGGACCTGGAGCCCGGCACCATGG
genomic: GAGGCCACCGGCGgtgagtcaac ... tgcgcttcagGCCGCTACGTGCCCCGCGCCATCCTGATGGACCTGGAGCCCGGCACCATGG
EST: gi|161815734|gb|FC101849.1|FC101849
EST:     CGACCTGCAGCTGGAGCGCATCAACGTGTACTTCAACGAGGCCACCGGCG                         GCCGCTACGTGCCCCGCGCCATCCTGATGGACCTGGAGCCCGGCACCATGG
genomic: CGACCTGCAGCTGGAGCGCATCAACGTGTACTTCAACGAGGCCACCGGCGgtgagtcaac ... tgcgcttcagGCCGCTACGTGCCCCGCGCCATCCTGATGGACCTGGAGCCCGGCACCATGG
EST: gi|49464417|gb|BP092330.1|BP092330
EST:     CGACCTGCAGCTGGAGCGCATCAACGTGTACTTCAACGAGGCCACCGGCG                         GACGCTACGTGCCCCGCGCCATCCTGATGGACCTGGAGCCCGGCACCATGG
genomic: CGACCTGCAGCTGGAGCGCATCAACGTGTACTTCAACGAGGCCACCGGCGgtgagtcaac ... tgcgcttcagGCCGCTACGTGCCCCGCGCCATCCTGATGGACCTGGAGCCCGGCACCATGG
EST: gi|161809594|gb|FC096586.1|FC096586
EST:     CGACCTGCAGCTGGAGCGCATCAACGTGTACTTCAACGAGGCCACCGGTG                         GCCGCTACGTGCCCCGCGCCATCCTGATGGACCTGGAGCCCGGCACCATGG
genomic: CGACCTGCAGCTGGAGCGCATCAACGTGTACTTCAACGAGGCCACCGGCGgtgagtcaac ... tgcgcttcagGCCGCTACGTGCCCCGCGCCATCCTGATGGACCTGGAGCCCGGCACCATGG
EST: gi|22071269|gb|BQ820607.1|BQ820607
EST:     CGACCTGCAGCTGGAGCGCATCAACGTGTACTTCAACGAGGCCACCGGCG                         GCCGCTACGTGCCCCGCGCCATCCTGATGG
genomic: CGACCTGCAGCTGGAGCGCATCAACGTGTACTTCAACGAGGCCACCGGCGgtgagtcaac ... tgcgcttcagGCCGCTACGTGCCCCGCGCCATCCTGATGG
EST: gi|22058264|gb|BQ812923.1|BQ812923
EST:     CGACCTGCAGCTGGAGCGCATCAACGTGTACTTCAACGAGGCCACCGGCG                         GCCGCTACGTGCCCCGCGCCATCCTGATGGACCTGGAGCCCGGCACCATGG
genomic: CGACCTGCAGCTGGAGCGCATCAACGTGTACTTCAACGAGGCCACCGGCGgtgagtcaac ... tgcgcttcagGCCGCTACGTGCCCCGCGCCATCCTGATGGACCTGGAGCCCGGCACCATGG
EST: gi|161816526|gb|FC105625.1|FC105625
EST:     CGACCTGCAGCTGGAGCGCATCAACGTGTACTTCAACGAGGCCACCGGTG                         GCCGCTACGTGCCCCGCGCCATCCTGATGGACCTGGAGCCCGGCACCATGG
genomic: CGACCTGCAGCTGGAGCGCATCAACGTGTACTTCAACGAGGCCACCGGCGgtgagtcaac ... tgcgcttcagGCCGCTACGTGCCCCGCGCCATCCTGATGGACCTGGAGCCCGGCACCATGG
EST: gi|49461181|gb|BP089094.1|BP089094
EST:     CGACCTGCAGCTGGAGCGCATCAACGTGTACTTCAACGAGGCCACCGGCG                         GCCGCTACGTGCCCCGCGCCATCCTGATGGACCTGGAGCCCGGCACCATGG
genomic: CGACCTGCAGCTGGAGCGCATCAACGTGTACTTCAACGAGGCCACCGGCGgtgagtcaac ... tgcgcttcagGCCGCTACGTGCCCCGCGCCATCCTGATGGACCTGGAGCCCGGCACCATGG
EST: gi|7687124|gb|AW757772.1|AW757772
EST:     CGACCTGCAGCTGGAGCGCATCAACGTGTACTTCAACGAGGCCACCGGCG                         GCCGCTACGTGCCCCGCGCCATCCTGATGGACCTGGAGCCCGGCACCATGG
genomic: CGACCTGCAGCTGGAGCGCATCAACGTGTACTTCAACGAGGCCACCGGCGgtgagtcaac ... tgcgcttcagGCCGCTACGTGCCCCGCGCCATCCTGATGGACCTGGAGCCCGGCACCATGG
EST: gi|161801035|gb|FC083098.1|FC083098
EST:     CGACCTGCAGCTGGAGCGCATCAACGTGTACTTCAACGAGGCCACCGGCG                         GCCGCTACGTGCCCCGCGCCATCCTGATGGACCTGGAGCCCGGCACCATGG
genomic: CGACCTGCAGCTGGAGCGCATCAACGTGTACTTCAACGAGGCCACCGGCGgtgagtcaac ... tgcgcttcagGCCGCTACGTGCCCCGCGCCATCCTGATGGACCTGGAGCCCGGCACCATGG
EST: gi|49459834|gb|BP087747.1|BP087747
EST:     CGACCTGCAGCTGGAGCGCATCAACGTGTACTTCAACGAGGCCACCGGCG                         GCCGCTACGTGCCCCGCGCCATCCTGATGGACCTGGAGCCCGGCA
genomic: CGACCTGCAGCTGGAGCGCATCAACGTGTACTTCAACGAGGCCACCGGCGgtgagtcaac ... tgcgcttcagGCCGCTACGTGCCCCGCGCCATCCTGATGGACCTGGAGCCCGGCA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cttctctctgttccgacaccacatgcgctgacaacaattctgtcttgcgcttcagGCCGCTACGTGCCCCGCGCCATCCTGATGGACCTGGAGCCCGGCACCATGGATTCCGTGCGCTCGGGCCCCTACGGCCAGATTTTCCGCCCGGACAACTT
                         cgctgac  putative branch site (score: 3)
                                     ttctgtctt  putative PPT
                                aacaatt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtggtccagcgctcgtgtggatgcccgtcgcgtgctagtcagcaccttctctctgttccgacaccacatgcgctgacaacaattctgtcttgcgcttcagGCCGCTACGTGCCCCGCGCCATCCTGATGGACCTGGAGCCCGGCACCATGGATTCCGTGCGCTCGGGCCCCTACGGCCAGATTTTCCGCCCGGACAACTT

- - - - - - - -tgtggat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -acatgcg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -acaacaa