1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
...gccccagcacaacagcgcgtaccggtatcccccgcgctcccacaagcccacatgccttacgtataatcacgcacacccacacccacacccacacccgcagGCTCCCCGCTTCGTGTGGTGGGAGGGCAAGCTGCGCCCCGTGCCCTCGGGCCTGGACGCCTTCACCTTCGACCTCATGTCCATCCCCGGCAAGATCCGCG
species | Chlamydomonas reinhardtii |
transcript | EDP02493 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
gcccacatgccttacgtataatcacgcacacccacacccacacccacacccgcagGCTCCCCGCTTCGTGTGGTGGGAGGGCAAGCTGCGCCCCGTGCCCTCGGGCCTGGACGCCTTCACCTTCGACCTCATGTCCATCCCCGGCAAGATCCGCG
gccttac putative branch site (score: 3)
tataatca TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gccccagcacaacagcgcgtaccggtatcccccgcgctcccacaagcccacatgccttacgtataatcacgcacacccacacccacacccacacccgcagGCTCCCCGCTTCGTGTGGTGGGAGGGCAAGCTGCGCCCCGTGCCCTCGGGCCTGGACGCCTTCACCTTCGACCTCATGTCCATCCCCGGCAAGATCCGCG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA
- - - -cacaaca
- - - - - - - - - - - - - - - - - - -tcccaca
- - - - - - - - - - - - - - - - - - - - - - - - -acatgcc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - acgtata
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - acgcaca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - acccaca