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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaacgcgtcgcactcgtcgttacgcaatgtgacaaaagctgctgccaacgcgggctgacaaagtcgttttttcttgatgccgcagTCATCGGTATTGTCATCCTCCTTGCTGGATTTGGTGGCGGCTTTGGAGCTGGCTGGGGGGCACGCGGCGTGAACCAGAACGAGGAGCCGTGCACGATTCA

Basic information

species Chlamydomonas reinhardtii
transcript EDP02234
intron # 2
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|49467737|gb|BP095598.1|BP095598
EST:     CTATGGCCGCAGCGAGTATACCTGGGACTTGCCGTGGCGCCTGCTAACAG                         TCATCGGTATTGTCATCCTCCTTGCTGGATTTGGTGGCGGCTTTGGAGCTG
genomic: CTATGGCCGCAGCGAGTATACCTGGGACTTGCCGTGGCGCCTGCTAACAGgtaacgcgtc ... gatgccgcagTCATCGGTATTGTCATCCTCCTTGCTGGATTTGGTGGCGGCTTTGGAGCTG
EST: gi|49467316|gb|BP095229.1|BP095229
EST:     CTATGGCCGCAGCGAGTATACCTGGGACTTGCCGTGGCGCCTGCTAACAG                         TCATCGGTATCGTCATCCTCCTTGCTGGATTCGGTGGCGGCTTTGGAGCTG
genomic: CTATGGCCGCAGCGAGTATACCTGGGACTTGCCGTGGCGCCTGCTAACAGgtaacgcgtc ... gatgccgcagTCATCGGTATTGTCATCCTCCTTGCTGGATTTGGTGGCGGCTTTGGAGCTG
EST: gi|49467670|gb|BP095531.1|BP095531
EST:     TATGGCCGCAGCGAGTATACCTGGGACTTGCCGTGGCTGCCTGCTAACAG                         TCATCGGTATAGTCATCCTCCTTGCTGGATTTGGTGGCGGCTTTGGAGCTG
genomic: TATGGCCGCAGCGAGTATACCTGGGACTTGCCGTGGC-GCCTGCTAACAGgtaacgcgtc ... gatgccgcagTCATCGGTATTGTCATCCTCCTTGCTGGATTTGGTGGCGGCTTTGGAGCTG
EST: gi|10783820|gb|AV640492.1|AV640492
EST:     CTATGGCCGCAGCGAGTATACCTGGGACTTGCCGTGGCGCCTGCTAACAG                         TCATCGGTATTGTCATCCTCCTTGCTGGATTTGGTGGCGGCTTTGGAGCTG
genomic: CTATGGCCGCAGCGAGTATACCTGGGACTTGCCGTGGCGCCTGCTAACAGgtaacgcgtc ... gatgccgcagTCATCGGTATTGTCATCCTCCTTGCTGGATTTGGTGGCGGCTTTGGAGCTG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gacaaaagctgctgccaacgcgggctgacaaagtcgttttttcttgatgccgcagTCATCGGTATTGTCATCCTCCTTGCTGGATTTGGTGGCGGCTTTGGAGCTGGCTGGGGGGCACGCGGCGTGAACCAGAACGAGGAGCCGTGCACGATTCA
                                    ttttttcttg  CT-rich tract
                                    ttttttctt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtaacgcgtcgcactcgtcgttacgcaatgtgacaaaagctgctgccaacgcgggctgacaaagtcgttttttcttgatgccgcagTCATCGGTATTGTCATCCTCCTTGCTGGATTTGGTGGCGGCTTTGGAGCTGGCTGGGGGGCACGCGGCGTGAACCAGAACGAGGAGCCGTGCACGATTCA

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG