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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgcgggacctagacatgcgcgcgaatgctgcaaccgggcctgcttttcttcgcgcgctggccgctcaccatcgcaacctgttgcagGTCCTGCATGTGGACCGCAACAACTACTACGGTGGCGAGTCCGCGTCGCTCAACCTCATCCAG

Basic information

species Chlamydomonas reinhardtii
transcript EDP02072
intron # 2
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|14228932|gb|BG847764.1|BG847764
EST:     TTCTGAAGGAGTGCATCATCAGTGGCCTGCTGTCGGTGGACAAGAAGAAG                         GTCCTGCATGTGGACCGCAACAACTACTACGGTGGCGAGTCCGCGTCGCTC
genomic: -TCTGAAGGAGTGCATCATCAGTGGCCTGCTGTCGGTGGACAAGAAGAAGgtgcgggacc ... cctgttgcagGTCCTGCATGTGGACCGCAACAACTACTACGGTGGCGAGTCCGCGTCGCTC
EST: gi|15692808|gb|BI717113.1|BI717113
EST:     GTCTGAAGGAGTGCATCATCAGTGGCCTGCTGTCGGTGGACAAGAAGAAG                         GTCCTGCATGTGGACCGCAACAACTACTACGGTGGCGAGTCCGCGTCGCTC
genomic: GTCTGAAGGAGTGCATCATCAGTGGCCTGCTGTCGGTGGACAAGAAGAAGgtgcgggacc ... cctgttgcagGTCCTGCATGTGGACCGCAACAACTACTACGGTGGCGAGTCCGCGTCGCTC
EST: gi|15695185|gb|BI719490.1|BI719490
EST:     GTCTGAAGGAGTGCATCATCAGTGGCCTGCTGTCGGTGGACAAGAAGAAG                         GTCCTGCATGTGGACCGCAACAACTACTACGGTGGCGAGTCCGCGTCGCTC
genomic: GTCTGAAGGAGTGCATCATCAGTGGCCTGCTGTCGGTGGACAAGAAGAAGgtgcgggacc ... cctgttgcagGTCCTGCATGTGGACCGCAACAACTACTACGGTGGCGAGTCCGCGTCGCTC
EST: gi|10792553|gb|AV629919.1|AV629919
EST:     GTCTGAAGGAGTGCATCATCAGTGGCCTGCTGTCGGTGGACAAGAAGAAG                         GTCCTGCATGTGGACCGCAACAACTACTACGGTGGCGAGTCCGCGTCGCTC
genomic: GTCTGAAGGAGTGCATCATCAGTGGCCTGCTGTCGGTGGACAAGAAGAAGgtgcgggacc ... cctgttgcagGTCCTGCATGTGGACCGCAACAACTACTACGGTGGCGAGTCCGCGTCGCTC
EST: gi|10778846|gb|AV635526.1|AV635526
EST:     GTCTGAAGGAGTGCATCATCAGTGGCCTGCTGTCGGTGGACAAGAAGAAG                         GTCCTGCATGTGGACCGCAACAACTACTACGGTGGCGAGTCCGCGTCGCTC
genomic: GTCTGAAGGAGTGCATCATCAGTGGCCTGCTGTCGGTGGACAAGAAGAAGgtgcgggacc ... cctgttgcagGTCCTGCATGTGGACCGCAACAACTACTACGGTGGCGAGTCCGCGTCGCTC
EST: gi|23367697|gb|BU655515.1|BU655515
EST:     GTCTGAAGGAGTGCATCATCAGTGGCCTGCTGTCGGTGGACAAGAAGAAG                         GTCCTGCATGTGGACCGCAACAACTACTACGGTGGCGAGTCCGCGTCGCTC
genomic: GTCTGAAGGAGTGCATCATCAGTGGCCTGCTGTCGGTGGACAAGAAGAAGgtgcgggacc ... cctgttgcagGTCCTGCATGTGGACCGCAACAACTACTACGGTGGCGAGTCCGCGTCGCTC
EST: gi|16072685|gb|BI874681.1|BI874681
EST:     GTCTGAAGGAGTGCATCATCAGTGGCCTGCTGTCGGTGGACAAGAAGAAG                         GTCCTGCATGTGGACCGCAACAACTACTACGGTGGCGAGTCCGCGTCGCTC
genomic: GTCTGAAGGAGTGCATCATCAGTGGCCTGCTGTCGGTGGACAAGAAGAAGgtgcgggacc ... cctgttgcagGTCCTGCATGTGGACCGCAACAACTACTACGGTGGCGAGTCCGCGTCGCTC
EST: gi|23363461|gb|BU651281.1|BU651281
EST:     GTCTGAAGGAGTGCATCATCAGTGGCCTGCTGTCGGTGGACAAGAAGAAG                         GTCCTGCATGTGGACCGCAACAACTACTACGGTGGCGAGTCCGCGTCGCTC
genomic: GTCTGAAGGAGTGCATCATCAGTGGCCTGCTGTCGGTGGACAAGAAGAAGgtgcgggacc ... cctgttgcagGTCCTGCATGTGGACCGCAACAACTACTACGGTGGCGAGTCCGCGTCGCTC
EST: gi|15695448|gb|BI719753.1|BI719753
EST:     GTCTGAAGGAGTGCATCATCAGTGGCCTGCTGTCGGTGGACAAGAAGAAG                         GTCCTGCATGTGGACCGCAACAACTACTACGGTGGCGAGTCCGCGTCGCTC
genomic: GTCTGAAGGAGTGCATCATCAGTGGCCTGCTGTCGGTGGACAAGAAGAAGgtgcgggacc ... cctgttgcagGTCCTGCATGTGGACCGCAACAACTACTACGGTGGCGAGTCCGCGTCGCTC
EST: gi|8933063|gb|BE227824.1|BE227824
EST:     GTCTGAAGGAGTGCATCATCAGTGGCCTGCTGTCGGTGGACAAGAAGAAG                         GTCCTGCATGTGGACCGCAACAACTACTACGGTGGCGAGTCCGCGTCGCTC
genomic: GTCTGAAGGAGTGCATCATCAGTGGCCTGCTGTCGGTGGACAAGAAGAAGgtgcgggacc ... cctgttgcagGTCCTGCATGTGGACCGCAACAACTACTACGGTGGCGAGTCCGCGTCGCTC
EST: gi|16437590|gb|BM002810.1|BM002810
EST:     GTCTGAAGGAGTGCATCATCAGTGGCCTGCTGTCGGTGGACAAGAAGAAG                         GTCCTGCATGTGGACCGCAACAACTACTACGGTGGCGAGTCCGCGTCGCTC
genomic: GTCTGAAGGAGTGCATCATCAGTGGCCTGCTGTCGGTGGACAAGAAGAAGgtgcgggacc ... cctgttgcagGTCCTGCATGTGGACCGCAACAACTACTACGGTGGCGAGTCCGCGTCGCTC
EST: gi|16431544|gb|BI996770.1|BI996770
EST:     GTCTGAAGGAGTGCATCATCAGTGGCCTGCTGTCGGTGGACAAGAAGAAG                         GTCCTGCATGTGGACCGCAACAACTACTACGGTGGCGAGTCCGCGTCGCTC
genomic: GTCTGAAGGAGTGCATCATCAGTGGCCTGCTGTCGGTGGACAAGAAGAAGgtgcgggacc ... cctgttgcagGTCCTGCATGTGGACCGCAACAACTACTACGGTGGCGAGTCCGCGTCGCTC
EST: gi|22050064|gb|BQ809049.1|BQ809049
EST:     GTCTGAAGGAGTGCATCATCAGTGGCCTGCTGTCGGTGGACAAGAAGAAG                         GTCCTGCATGTGGACCGCAACAACTACTACGGTGGCGAGTCCGCGTCGCTC
genomic: GTCTGAAGGAGTGCATCATCAGTGGCCTGCTGTCGGTGGACAAGAAGAAGgtgcgggacc ... cctgttgcagGTCCTGCATGTGGACCGCAACAACTACTACGGTGGCGAGTCCGCGTCGCTC
EST: gi|23365706|gb|BU653526.1|BU653526
EST:     GTCTGAAGGAGTGCATCATCAGTGGCCTGCTGTCGGTGGACAAGAAGAAG                         GTCCTGCATGTGGACCGCAACAACTACTACGGTGGCGAGTCCGCGTCGCTC
genomic: GTCTGAAGGAGTGCATCATCAGTGGCCTGCTGTCGGTGGACAAGAAGAAGgtgcgggacc ... cctgttgcagGTCCTGCATGTGGACCGCAACAACTACTACGGTGGCGAGTCCGCGTCGCTC
EST: gi|15697745|gb|BI722050.1|BI722050
EST:     GTCTGAAGGAGTGCATCATCAGTGGCCTGCTGTCGGTGGACAAGAAGAAG                         GTCCTGCATGTGGACCGCAACAACTACTACGGTGGCGAGTCCGCGTCGCTC
genomic: GTCTGAAGGAGTGCATCATCAGTGGCCTGCTGTCGGTGGACAAGAAGAAGgtgcgggacc ... cctgttgcagGTCCTGCATGTGGACCGCAACAACTACTACGGTGGCGAGTCCGCGTCGCTC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aaccgggcctgcttttcttcgcgcgctggccgctcaccatcgcaacctgttgcagGTCCTGCATGTGGACCGCAACAACTACTACGGTGGCGAGTCCGCGTCGCTCAACCTCATCCAG
                              cgctcac  putative branch site (score: 3)
            ttttctt  TA-rich tract